Experiment: Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1223 and Ac3H11_1224 are separated by 18 nucleotides Ac3H11_1224 and Ac3H11_1225 are separated by 15 nucleotides Ac3H11_1225 and Ac3H11_1226 are separated by 36 nucleotides
Ac3H11_1223 - FIG002994: Putative transcriptional regulator, at 41,594 to 42,049
_1223
Ac3H11_1224 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 42,068 to 42,973
_1224
Ac3H11_1225 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 42,989 to 43,888
_1225
Ac3H11_1226 - Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25), at 43,925 to 44,836
_1226
Position (kb) 42
43
44 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 42.122 kb on + strand at 42.123 kb on - strand at 42.171 kb on + strand, within Ac3H11_1224 at 42.172 kb on - strand, within Ac3H11_1224 at 42.192 kb on + strand, within Ac3H11_1224 at 42.232 kb on - strand, within Ac3H11_1224 at 42.254 kb on + strand, within Ac3H11_1224 at 42.381 kb on + strand, within Ac3H11_1224 at 42.381 kb on + strand, within Ac3H11_1224 at 42.382 kb on - strand, within Ac3H11_1224 at 42.382 kb on - strand, within Ac3H11_1224 at 42.444 kb on + strand, within Ac3H11_1224 at 42.444 kb on + strand, within Ac3H11_1224 at 42.445 kb on - strand, within Ac3H11_1224 at 42.445 kb on - strand, within Ac3H11_1224 at 42.578 kb on + strand, within Ac3H11_1224 at 42.578 kb on + strand, within Ac3H11_1224 at 42.579 kb on - strand, within Ac3H11_1224 at 42.717 kb on + strand, within Ac3H11_1224 at 42.717 kb on + strand, within Ac3H11_1224 at 43.315 kb on - strand, within Ac3H11_1225 at 43.315 kb on - strand, within Ac3H11_1225 at 43.353 kb on + strand, within Ac3H11_1225 at 43.353 kb on + strand, within Ac3H11_1225 at 43.353 kb on + strand, within Ac3H11_1225 at 43.354 kb on - strand, within Ac3H11_1225 at 43.354 kb on - strand, within Ac3H11_1225 at 43.354 kb on - strand, within Ac3H11_1225 at 43.438 kb on - strand, within Ac3H11_1225 at 43.471 kb on - strand, within Ac3H11_1225 at 43.710 kb on + strand, within Ac3H11_1225 at 44.103 kb on + strand, within Ac3H11_1226 at 44.103 kb on + strand, within Ac3H11_1226 at 44.103 kb on + strand, within Ac3H11_1226 at 44.103 kb on + strand, within Ac3H11_1226 at 44.104 kb on - strand, within Ac3H11_1226 at 44.104 kb on - strand, within Ac3H11_1226 at 44.256 kb on + strand, within Ac3H11_1226 at 44.257 kb on - strand, within Ac3H11_1226 at 44.568 kb on + strand, within Ac3H11_1226 at 44.568 kb on + strand, within Ac3H11_1226 at 44.569 kb on - strand, within Ac3H11_1226 at 44.569 kb on - strand, within Ac3H11_1226 at 44.589 kb on + strand, within Ac3H11_1226 at 44.590 kb on - strand, within Ac3H11_1226 at 44.671 kb on - strand, within Ac3H11_1226 at 44.776 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml remove 42,122 + +0.1 42,123 - -1.9 42,171 + Ac3H11_1224 0.11 +0.4 42,172 - Ac3H11_1224 0.11 +0.3 42,192 + Ac3H11_1224 0.14 +0.2 42,232 - Ac3H11_1224 0.18 +0.7 42,254 + Ac3H11_1224 0.21 +2.0 42,381 + Ac3H11_1224 0.35 +2.7 42,381 + Ac3H11_1224 0.35 -2.7 42,382 - Ac3H11_1224 0.35 +1.1 42,382 - Ac3H11_1224 0.35 -1.4 42,444 + Ac3H11_1224 0.42 +1.4 42,444 + Ac3H11_1224 0.42 -2.4 42,445 - Ac3H11_1224 0.42 -0.2 42,445 - Ac3H11_1224 0.42 -1.6 42,578 + Ac3H11_1224 0.56 +1.4 42,578 + Ac3H11_1224 0.56 +2.1 42,579 - Ac3H11_1224 0.56 -2.9 42,717 + Ac3H11_1224 0.72 -0.1 42,717 + Ac3H11_1224 0.72 +0.4 43,315 - Ac3H11_1225 0.36 +1.9 43,315 - Ac3H11_1225 0.36 -2.5 43,353 + Ac3H11_1225 0.40 -2.1 43,353 + Ac3H11_1225 0.40 -1.2 43,353 + Ac3H11_1225 0.40 +0.2 43,354 - Ac3H11_1225 0.41 -3.4 43,354 - Ac3H11_1225 0.41 +0.1 43,354 - Ac3H11_1225 0.41 +1.1 43,438 - Ac3H11_1225 0.50 +0.9 43,471 - Ac3H11_1225 0.54 -1.1 43,710 + Ac3H11_1225 0.80 -0.5 44,103 + Ac3H11_1226 0.20 -0.7 44,103 + Ac3H11_1226 0.20 -0.5 44,103 + Ac3H11_1226 0.20 -0.9 44,103 + Ac3H11_1226 0.20 -0.5 44,104 - Ac3H11_1226 0.20 -1.2 44,104 - Ac3H11_1226 0.20 -0.3 44,256 + Ac3H11_1226 0.36 +0.9 44,257 - Ac3H11_1226 0.36 +1.1 44,568 + Ac3H11_1226 0.71 +1.5 44,568 + Ac3H11_1226 0.71 -0.2 44,569 - Ac3H11_1226 0.71 +1.1 44,569 - Ac3H11_1226 0.71 +2.3 44,589 + Ac3H11_1226 0.73 +1.7 44,590 - Ac3H11_1226 0.73 -3.9 44,671 - Ac3H11_1226 0.82 -0.9 44,776 + +0.6
Or see this region's nucleotide sequence