Experiment: Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1150 and Ac3H11_1151 are separated by 618 nucleotides Ac3H11_1151 and Ac3H11_1152 overlap by 2 nucleotides Ac3H11_1152 and Ac3H11_1153 are separated by 109 nucleotides Ac3H11_1153 and Ac3H11_1154 overlap by 17 nucleotides
Ac3H11_1150 - Major facilitator family transporter, at 102,160 to 103,407
_1150
Ac3H11_1151 - hypothetical protein, at 104,026 to 104,154
_1151
Ac3H11_1152 - hypothetical protein, at 104,153 to 104,401
_1152
Ac3H11_1153 - hypothetical protein, at 104,511 to 105,059
_1153
Ac3H11_1154 - hypothetical protein, at 105,043 to 105,876
_1154
Position (kb) 104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 103.082 kb on + strand, within Ac3H11_1150 at 103.082 kb on + strand, within Ac3H11_1150 at 103.082 kb on + strand, within Ac3H11_1150 at 103.082 kb on + strand, within Ac3H11_1150 at 103.082 kb on + strand, within Ac3H11_1150 at 103.082 kb on + strand, within Ac3H11_1150 at 103.082 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.161 kb on - strand, within Ac3H11_1150 at 103.161 kb on - strand, within Ac3H11_1150 at 103.161 kb on - strand, within Ac3H11_1150 at 103.161 kb on - strand, within Ac3H11_1150 at 103.479 kb on + strand at 103.479 kb on + strand at 103.565 kb on + strand at 103.566 kb on - strand at 103.566 kb on - strand at 103.566 kb on - strand at 103.566 kb on - strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.643 kb on - strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.928 kb on - strand at 103.928 kb on - strand at 103.928 kb on - strand at 103.928 kb on - strand at 103.928 kb on - strand at 103.928 kb on - strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.160 kb on - strand at 104.198 kb on + strand, within Ac3H11_1152 at 104.198 kb on + strand, within Ac3H11_1152 at 104.199 kb on - strand, within Ac3H11_1152 at 104.199 kb on - strand, within Ac3H11_1152 at 104.199 kb on - strand, within Ac3H11_1152 at 104.399 kb on + strand at 104.399 kb on + strand at 104.400 kb on - strand at 104.400 kb on - strand at 104.400 kb on - strand at 104.400 kb on - strand at 104.400 kb on - strand at 105.074 kb on + strand at 105.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml remove 103,082 + Ac3H11_1150 0.74 +1.2 103,082 + Ac3H11_1150 0.74 +0.7 103,082 + Ac3H11_1150 0.74 +1.2 103,082 + Ac3H11_1150 0.74 -2.4 103,082 + Ac3H11_1150 0.74 +1.1 103,082 + Ac3H11_1150 0.74 +2.6 103,082 + Ac3H11_1150 0.74 -1.3 103,160 + Ac3H11_1150 0.80 -0.8 103,160 + Ac3H11_1150 0.80 -3.1 103,160 + Ac3H11_1150 0.80 -0.4 103,160 + Ac3H11_1150 0.80 +1.2 103,160 + Ac3H11_1150 0.80 +0.8 103,160 + Ac3H11_1150 0.80 +2.7 103,161 - Ac3H11_1150 0.80 -0.9 103,161 - Ac3H11_1150 0.80 +1.9 103,161 - Ac3H11_1150 0.80 -0.4 103,161 - Ac3H11_1150 0.80 -0.3 103,479 + +0.4 103,479 + +1.5 103,565 + +1.0 103,566 - +4.1 103,566 - +0.7 103,566 - -0.8 103,566 - -2.5 103,570 + +0.4 103,570 + +0.9 103,570 + +0.6 103,570 + +0.0 103,570 + +2.2 103,570 + +0.7 103,571 - +0.8 103,571 - -3.3 103,571 - -0.5 103,571 - -1.0 103,571 - +1.7 103,571 - -2.5 103,571 - -1.4 103,571 - -1.7 103,643 - +1.0 103,927 + -0.9 103,927 + -2.3 103,927 + +0.2 103,927 + +0.8 103,927 + -1.4 103,927 + +1.0 103,927 + +0.1 103,927 + -0.2 103,927 + +0.1 103,927 + +0.6 103,927 + -0.5 103,928 - +1.4 103,928 - -2.0 103,928 - -0.3 103,928 - +1.3 103,928 - +1.7 103,928 - -0.2 104,159 + -1.0 104,159 + +0.3 104,159 + +2.9 104,159 + -1.2 104,159 + -1.4 104,159 + -2.5 104,159 + +1.7 104,159 + +0.1 104,159 + -2.1 104,160 - -0.4 104,198 + Ac3H11_1152 0.18 -0.5 104,198 + Ac3H11_1152 0.18 -2.7 104,199 - Ac3H11_1152 0.18 -0.3 104,199 - Ac3H11_1152 0.18 +0.3 104,199 - Ac3H11_1152 0.18 +0.4 104,399 + -2.4 104,399 + -1.0 104,400 - +1.3 104,400 - -0.7 104,400 - -0.9 104,400 - -0.7 104,400 - +1.6 105,074 + -1.4 105,081 - -0.1
Or see this region's nucleotide sequence