Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32545 and AZOBR_RS32550 are separated by 143 nucleotides AZOBR_RS32550 and AZOBR_RS32555 overlap by 8 nucleotides AZOBR_RS32555 and AZOBR_RS32560 are separated by 114 nucleotides
AZOBR_RS32545: AZOBR_RS32545 - hypothetical protein, at 665,889 to 666,413
_RS32545
AZOBR_RS32550: AZOBR_RS32550 - hypothetical protein, at 666,557 to 666,787
_RS32550
AZOBR_RS32555: AZOBR_RS32555 - membrane protein, at 666,780 to 667,823
_RS32555
AZOBR_RS32560: AZOBR_RS32560 - LysR family transcriptional regulator, at 667,938 to 668,819
_RS32560
Position (kb) 666
667
668 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 665.789 kb on + strand at 665.789 kb on + strand at 665.789 kb on + strand at 665.790 kb on - strand at 665.790 kb on - strand at 666.411 kb on + strand at 666.411 kb on + strand at 666.411 kb on + strand at 666.411 kb on + strand at 666.411 kb on + strand at 666.411 kb on + strand at 666.411 kb on + strand at 667.061 kb on + strand, within AZOBR_RS32555 at 667.062 kb on - strand, within AZOBR_RS32555 at 667.062 kb on - strand, within AZOBR_RS32555 at 667.062 kb on - strand, within AZOBR_RS32555 at 667.239 kb on - strand, within AZOBR_RS32555 at 667.465 kb on + strand, within AZOBR_RS32555 at 667.466 kb on - strand, within AZOBR_RS32555 at 667.466 kb on - strand, within AZOBR_RS32555 at 667.884 kb on + strand at 667.887 kb on - strand at 667.906 kb on - strand at 668.413 kb on + strand, within AZOBR_RS32560 at 668.413 kb on + strand, within AZOBR_RS32560 at 668.413 kb on + strand, within AZOBR_RS32560 at 668.413 kb on + strand, within AZOBR_RS32560 at 668.413 kb on + strand, within AZOBR_RS32560 at 668.414 kb on - strand, within AZOBR_RS32560 at 668.414 kb on - strand, within AZOBR_RS32560 at 668.817 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 665,789 + -3.9 665,789 + +1.5 665,789 + +0.4 665,790 - -0.5 665,790 - -0.9 666,411 + +0.2 666,411 + +0.2 666,411 + +0.3 666,411 + +0.6 666,411 + -0.5 666,411 + +0.1 666,411 + +0.3 667,061 + AZOBR_RS32555 0.27 -0.3 667,062 - AZOBR_RS32555 0.27 -0.5 667,062 - AZOBR_RS32555 0.27 -0.7 667,062 - AZOBR_RS32555 0.27 -0.1 667,239 - AZOBR_RS32555 0.44 +0.1 667,465 + AZOBR_RS32555 0.66 +0.9 667,466 - AZOBR_RS32555 0.66 -0.8 667,466 - AZOBR_RS32555 0.66 -1.5 667,884 + -1.2 667,887 - -0.0 667,906 - -0.1 668,413 + AZOBR_RS32560 0.54 +0.3 668,413 + AZOBR_RS32560 0.54 +0.5 668,413 + AZOBR_RS32560 0.54 -0.7 668,413 + AZOBR_RS32560 0.54 -0.1 668,413 + AZOBR_RS32560 0.54 -0.4 668,414 - AZOBR_RS32560 0.54 -0.2 668,414 - AZOBR_RS32560 0.54 -0.6 668,817 + -1.7
Or see this region's nucleotide sequence