Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS28280

Experiment: casaminos (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS28270 and AZOBR_RS28280 are separated by 827 nucleotidesAZOBR_RS28280 and AZOBR_RS28285 overlap by 4 nucleotides AZOBR_RS28270: AZOBR_RS28270 - copper chaperone, at 510,552 to 511,151 _RS28270 AZOBR_RS28280: AZOBR_RS28280 - ABC transporter ATP-binding protein, at 511,979 to 512,848 _RS28280 AZOBR_RS28285: AZOBR_RS28285 - carbohydrate-binding protein, at 512,845 to 514,212 _RS28285 Position (kb) 511 512 513Strain fitness (log2 ratio) -1 0 1at 511.420 kb on + strandat 511.421 kb on - strandat 511.632 kb on + strandat 512.013 kb on + strandat 512.013 kb on + strandat 512.013 kb on + strandat 512.014 kb on - strandat 512.014 kb on - strandat 512.014 kb on - strandat 512.325 kb on + strand, within AZOBR_RS28280at 512.442 kb on + strand, within AZOBR_RS28280at 512.442 kb on + strand, within AZOBR_RS28280at 512.538 kb on + strand, within AZOBR_RS28280at 513.011 kb on + strand, within AZOBR_RS28285at 513.107 kb on + strand, within AZOBR_RS28285at 513.107 kb on + strand, within AZOBR_RS28285at 513.107 kb on + strand, within AZOBR_RS28285at 513.108 kb on - strand, within AZOBR_RS28285at 513.108 kb on - strand, within AZOBR_RS28285at 513.156 kb on - strand, within AZOBR_RS28285at 513.156 kb on - strand, within AZOBR_RS28285at 513.156 kb on - strand, within AZOBR_RS28285at 513.156 kb on - strand, within AZOBR_RS28285at 513.446 kb on + strand, within AZOBR_RS28285at 513.515 kb on + strand, within AZOBR_RS28285at 513.581 kb on + strand, within AZOBR_RS28285at 513.582 kb on - strand, within AZOBR_RS28285at 513.582 kb on - strand, within AZOBR_RS28285at 513.582 kb on - strand, within AZOBR_RS28285at 513.587 kb on + strand, within AZOBR_RS28285at 513.587 kb on + strand, within AZOBR_RS28285at 513.587 kb on + strand, within AZOBR_RS28285at 513.588 kb on - strand, within AZOBR_RS28285at 513.588 kb on - strand, within AZOBR_RS28285at 513.588 kb on - strand, within AZOBR_RS28285at 513.812 kb on + strand, within AZOBR_RS28285at 513.813 kb on - strand, within AZOBR_RS28285at 513.813 kb on - strand, within AZOBR_RS28285at 513.813 kb on - strand, within AZOBR_RS28285at 513.813 kb on - strand, within AZOBR_RS28285at 513.813 kb on - strand, within AZOBR_RS28285at 513.813 kb on - strand, within AZOBR_RS28285at 513.813 kb on - strand, within AZOBR_RS28285at 513.813 kb on - strand, within AZOBR_RS28285at 513.813 kb on - strand, within AZOBR_RS28285at 513.813 kb on - strand, within AZOBR_RS28285

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
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511,420 + +0.4
511,421 - +0.3
511,632 + +0.6
512,013 + +1.0
512,013 + -0.6
512,013 + -0.0
512,014 - -1.1
512,014 - +0.6
512,014 - -0.0
512,325 + AZOBR_RS28280 0.40 +0.9
512,442 + AZOBR_RS28280 0.53 +0.6
512,442 + AZOBR_RS28280 0.53 +0.5
512,538 + AZOBR_RS28280 0.64 +0.7
513,011 + AZOBR_RS28285 0.12 +0.7
513,107 + AZOBR_RS28285 0.19 +0.4
513,107 + AZOBR_RS28285 0.19 +0.3
513,107 + AZOBR_RS28285 0.19 +0.7
513,108 - AZOBR_RS28285 0.19 -0.2
513,108 - AZOBR_RS28285 0.19 +1.4
513,156 - AZOBR_RS28285 0.23 +0.5
513,156 - AZOBR_RS28285 0.23 -0.0
513,156 - AZOBR_RS28285 0.23 +0.8
513,156 - AZOBR_RS28285 0.23 +0.4
513,446 + AZOBR_RS28285 0.44 +1.3
513,515 + AZOBR_RS28285 0.49 +0.3
513,581 + AZOBR_RS28285 0.54 +0.1
513,582 - AZOBR_RS28285 0.54 -0.6
513,582 - AZOBR_RS28285 0.54 -0.0
513,582 - AZOBR_RS28285 0.54 +0.7
513,587 + AZOBR_RS28285 0.54 -0.1
513,587 + AZOBR_RS28285 0.54 -0.3
513,587 + AZOBR_RS28285 0.54 -0.1
513,588 - AZOBR_RS28285 0.54 +1.3
513,588 - AZOBR_RS28285 0.54 +0.8
513,588 - AZOBR_RS28285 0.54 +0.0
513,812 + AZOBR_RS28285 0.71 +0.6
513,813 - AZOBR_RS28285 0.71 +0.4
513,813 - AZOBR_RS28285 0.71 -0.6
513,813 - AZOBR_RS28285 0.71 +0.1
513,813 - AZOBR_RS28285 0.71 +0.6
513,813 - AZOBR_RS28285 0.71 -1.6
513,813 - AZOBR_RS28285 0.71 +1.5
513,813 - AZOBR_RS28285 0.71 +0.5
513,813 - AZOBR_RS28285 0.71 +0.1
513,813 - AZOBR_RS28285 0.71 -0.8
513,813 - AZOBR_RS28285 0.71 -0.4

Or see this region's nucleotide sequence