Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27950

Experiment: casaminos (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS27950 and AZOBR_RS27955 are separated by 131 nucleotides AZOBR_RS27950: AZOBR_RS27950 - transcriptional regulator, at 440,933 to 442,111 _RS27950 AZOBR_RS27955: AZOBR_RS27955 - glycoside hydrolase family 43, at 442,243 to 443,313 _RS27955 Position (kb) 440 441 442 443Strain fitness (log2 ratio) -2 -1 0 1at 440.157 kb on + strandat 440.158 kb on - strandat 440.795 kb on - strandat 440.803 kb on + strandat 440.879 kb on - strandat 441.728 kb on + strand, within AZOBR_RS27950at 441.729 kb on - strand, within AZOBR_RS27950at 441.729 kb on - strand, within AZOBR_RS27950at 442.109 kb on + strandat 442.109 kb on + strandat 442.109 kb on + strandat 442.195 kb on - strandat 442.316 kb on + strandat 442.993 kb on + strand, within AZOBR_RS27955at 442.993 kb on + strand, within AZOBR_RS27955at 442.993 kb on + strand, within AZOBR_RS27955at 442.994 kb on - strand, within AZOBR_RS27955at 442.994 kb on - strand, within AZOBR_RS27955at 442.994 kb on - strand, within AZOBR_RS27955at 442.994 kb on - strand, within AZOBR_RS27955at 442.994 kb on - strand, within AZOBR_RS27955at 443.080 kb on + strand, within AZOBR_RS27955at 443.080 kb on + strand, within AZOBR_RS27955at 443.080 kb on + strand, within AZOBR_RS27955

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
remove
440,157 + +0.1
440,158 - -1.0
440,795 - -0.5
440,803 + +0.0
440,879 - -0.0
441,728 + AZOBR_RS27950 0.67 +0.2
441,729 - AZOBR_RS27950 0.68 -1.1
441,729 - AZOBR_RS27950 0.68 -0.6
442,109 + +1.0
442,109 + -1.2
442,109 + -1.0
442,195 - +0.6
442,316 + -2.0
442,993 + AZOBR_RS27955 0.70 -0.5
442,993 + AZOBR_RS27955 0.70 +0.0
442,993 + AZOBR_RS27955 0.70 +0.1
442,994 - AZOBR_RS27955 0.70 -0.8
442,994 - AZOBR_RS27955 0.70 +0.2
442,994 - AZOBR_RS27955 0.70 +0.2
442,994 - AZOBR_RS27955 0.70 -0.1
442,994 - AZOBR_RS27955 0.70 -0.2
443,080 + AZOBR_RS27955 0.78 +0.2
443,080 + AZOBR_RS27955 0.78 -1.2
443,080 + AZOBR_RS27955 0.78 -0.9

Or see this region's nucleotide sequence