Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07250

Experiment: casaminos (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS07245 and AZOBR_RS07250 are separated by 33 nucleotidesAZOBR_RS07250 and AZOBR_RS07255 are separated by 28 nucleotidesAZOBR_RS07255 and AZOBR_RS07260 are separated by 25 nucleotides AZOBR_RS07245: AZOBR_RS07245 - RNA-metabolising metallo-beta-lactamase, at 1,528,835 to 1,530,499 _RS07245 AZOBR_RS07250: AZOBR_RS07250 - methylmalonyl-CoA epimerase, at 1,530,533 to 1,530,937 _RS07250 AZOBR_RS07255: AZOBR_RS07255 - hypothetical protein, at 1,530,966 to 1,531,214 _RS07255 AZOBR_RS07260: AZOBR_RS07260 - DNA-3-methyladenine glycosylase, at 1,531,240 to 1,531,839 _RS07260 Position (kb) 1530 1531Strain fitness (log2 ratio) -2 -1 0 1at 1529.696 kb on + strand, within AZOBR_RS07245at 1529.697 kb on - strand, within AZOBR_RS07245at 1529.965 kb on + strand, within AZOBR_RS07245at 1529.965 kb on + strand, within AZOBR_RS07245at 1529.966 kb on - strand, within AZOBR_RS07245at 1529.966 kb on - strand, within AZOBR_RS07245at 1529.966 kb on - strand, within AZOBR_RS07245at 1529.969 kb on + strand, within AZOBR_RS07245at 1529.969 kb on + strand, within AZOBR_RS07245at 1529.969 kb on + strand, within AZOBR_RS07245at 1529.969 kb on + strand, within AZOBR_RS07245at 1529.969 kb on + strand, within AZOBR_RS07245at 1529.970 kb on - strand, within AZOBR_RS07245at 1529.970 kb on - strand, within AZOBR_RS07245at 1529.970 kb on - strand, within AZOBR_RS07245at 1529.970 kb on - strand, within AZOBR_RS07245at 1530.495 kb on + strandat 1530.776 kb on + strand, within AZOBR_RS07250at 1530.777 kb on - strand, within AZOBR_RS07250at 1530.994 kb on - strand, within AZOBR_RS07255at 1530.994 kb on - strand, within AZOBR_RS07255at 1530.994 kb on - strand, within AZOBR_RS07255at 1530.994 kb on - strand, within AZOBR_RS07255at 1531.700 kb on - strand, within AZOBR_RS07260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
remove
1,529,696 + AZOBR_RS07245 0.52 -0.2
1,529,697 - AZOBR_RS07245 0.52 -0.2
1,529,965 + AZOBR_RS07245 0.68 -1.7
1,529,965 + AZOBR_RS07245 0.68 +0.5
1,529,966 - AZOBR_RS07245 0.68 -2.4
1,529,966 - AZOBR_RS07245 0.68 +0.9
1,529,966 - AZOBR_RS07245 0.68 -2.7
1,529,969 + AZOBR_RS07245 0.68 -0.2
1,529,969 + AZOBR_RS07245 0.68 -0.2
1,529,969 + AZOBR_RS07245 0.68 +0.2
1,529,969 + AZOBR_RS07245 0.68 -1.2
1,529,969 + AZOBR_RS07245 0.68 +0.5
1,529,970 - AZOBR_RS07245 0.68 +0.9
1,529,970 - AZOBR_RS07245 0.68 +1.4
1,529,970 - AZOBR_RS07245 0.68 -0.5
1,529,970 - AZOBR_RS07245 0.68 +0.7
1,530,495 + +0.5
1,530,776 + AZOBR_RS07250 0.60 -1.0
1,530,777 - AZOBR_RS07250 0.60 +0.3
1,530,994 - AZOBR_RS07255 0.11 +0.4
1,530,994 - AZOBR_RS07255 0.11 -2.2
1,530,994 - AZOBR_RS07255 0.11 +1.1
1,530,994 - AZOBR_RS07255 0.11 +0.2
1,531,700 - AZOBR_RS07260 0.77 +1.1

Or see this region's nucleotide sequence