Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00200 and AZOBR_RS00205 are separated by 70 nucleotides AZOBR_RS00205 and AZOBR_RS00210 are separated by 346 nucleotides
AZOBR_RS00200: AZOBR_RS00200 - hypothetical protein, at 32,645 to 34,279
_RS00200
AZOBR_RS00205: AZOBR_RS00205 - hypothetical protein, at 34,350 to 34,592
_RS00205
AZOBR_RS00210: AZOBR_RS00210 - hypothetical protein, at 34,939 to 35,442
_RS00210
Position (kb) 34
35 Strain fitness (log2 ratio) -1
0
1
2 at 33.398 kb on + strand, within AZOBR_RS00200 at 33.398 kb on + strand, within AZOBR_RS00200 at 33.461 kb on + strand, within AZOBR_RS00200 at 33.842 kb on + strand, within AZOBR_RS00200 at 33.842 kb on + strand, within AZOBR_RS00200 at 34.114 kb on + strand, within AZOBR_RS00200 at 34.114 kb on + strand, within AZOBR_RS00200 at 34.114 kb on + strand, within AZOBR_RS00200 at 34.133 kb on + strand at 34.133 kb on + strand at 34.134 kb on - strand at 34.184 kb on + strand at 34.184 kb on + strand at 34.185 kb on - strand at 34.185 kb on - strand at 34.930 kb on + strand at 34.930 kb on + strand at 34.931 kb on - strand at 34.931 kb on - strand at 35.074 kb on + strand, within AZOBR_RS00210 at 35.074 kb on + strand, within AZOBR_RS00210 at 35.137 kb on + strand, within AZOBR_RS00210 at 35.138 kb on - strand, within AZOBR_RS00210 at 35.138 kb on - strand, within AZOBR_RS00210 at 35.138 kb on - strand, within AZOBR_RS00210 at 35.272 kb on + strand, within AZOBR_RS00210 at 35.273 kb on - strand, within AZOBR_RS00210 at 35.273 kb on - strand, within AZOBR_RS00210 at 35.273 kb on - strand, within AZOBR_RS00210
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 33,398 + AZOBR_RS00200 0.46 +0.4 33,398 + AZOBR_RS00200 0.46 +0.3 33,461 + AZOBR_RS00200 0.50 +0.4 33,842 + AZOBR_RS00200 0.73 +1.1 33,842 + AZOBR_RS00200 0.73 -0.4 34,114 + AZOBR_RS00200 0.90 +0.3 34,114 + AZOBR_RS00200 0.90 +1.0 34,114 + AZOBR_RS00200 0.90 +1.5 34,133 + -0.1 34,133 + +0.0 34,134 - +0.5 34,184 + +0.3 34,184 + +1.8 34,185 - -0.0 34,185 - +0.1 34,930 + +1.0 34,930 + -0.6 34,931 - +0.5 34,931 - +0.2 35,074 + AZOBR_RS00210 0.27 -0.3 35,074 + AZOBR_RS00210 0.27 +0.3 35,137 + AZOBR_RS00210 0.39 -0.6 35,138 - AZOBR_RS00210 0.39 -0.1 35,138 - AZOBR_RS00210 0.39 +0.1 35,138 - AZOBR_RS00210 0.39 -1.5 35,272 + AZOBR_RS00210 0.66 -0.9 35,273 - AZOBR_RS00210 0.66 -0.2 35,273 - AZOBR_RS00210 0.66 +0.0 35,273 - AZOBR_RS00210 0.66 -0.8
Or see this region's nucleotide sequence