Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27715 and AO353_27720 are separated by 85 nucleotides AO353_27720 and AO353_27725 overlap by 8 nucleotides AO353_27725 and AO353_27730 are separated by 250 nucleotides
AO353_27715: AO353_27715 - adenylosuccinate lyase, at 6,041,448 to 6,042,818
_27715
AO353_27720: AO353_27720 - cupin, at 6,042,904 to 6,044,070
_27720
AO353_27725: AO353_27725 - GNAT family acetyltransferase, at 6,044,063 to 6,044,485
_27725
AO353_27730: AO353_27730 - secretin, at 6,044,736 to 6,045,533
_27730
Position (kb)
6042
6043
6044
6045 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6043.315 kb on + strand, within AO353_27720 at 6043.315 kb on + strand, within AO353_27720 at 6043.315 kb on + strand, within AO353_27720 at 6043.315 kb on + strand, within AO353_27720 at 6043.315 kb on + strand, within AO353_27720 at 6043.316 kb on - strand, within AO353_27720 at 6043.471 kb on + strand, within AO353_27720 at 6043.471 kb on + strand, within AO353_27720 at 6043.471 kb on + strand, within AO353_27720 at 6043.472 kb on - strand, within AO353_27720 at 6043.472 kb on - strand, within AO353_27720 at 6043.615 kb on + strand, within AO353_27720 at 6043.615 kb on + strand, within AO353_27720 at 6043.762 kb on + strand, within AO353_27720 at 6044.068 kb on + strand at 6044.068 kb on + strand at 6044.079 kb on + strand at 6044.079 kb on + strand at 6044.079 kb on + strand at 6044.280 kb on + strand, within AO353_27725 at 6044.281 kb on - strand, within AO353_27725 at 6044.402 kb on + strand, within AO353_27725 at 6044.402 kb on + strand, within AO353_27725 at 6044.403 kb on - strand, within AO353_27725 at 6044.403 kb on - strand, within AO353_27725 at 6044.403 kb on - strand, within AO353_27725 at 6044.403 kb on - strand, within AO353_27725 at 6044.403 kb on - strand, within AO353_27725 at 6044.488 kb on - strand at 6044.543 kb on - strand at 6044.632 kb on - strand at 6044.703 kb on + strand at 6044.703 kb on + strand at 6044.704 kb on - strand at 6044.704 kb on - strand at 6044.717 kb on - strand at 6044.889 kb on + strand, within AO353_27730 at 6044.969 kb on - strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.052 kb on - strand, within AO353_27730 at 6045.052 kb on - strand, within AO353_27730 at 6045.052 kb on - strand, within AO353_27730 at 6045.052 kb on - strand, within AO353_27730 at 6045.052 kb on - strand, within AO353_27730 at 6045.052 kb on - strand, within AO353_27730
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 6,043,315 + AO353_27720 0.35 -0.9 6,043,315 + AO353_27720 0.35 -0.9 6,043,315 + AO353_27720 0.35 -1.1 6,043,315 + AO353_27720 0.35 -1.0 6,043,315 + AO353_27720 0.35 +0.3 6,043,316 - AO353_27720 0.35 -0.5 6,043,471 + AO353_27720 0.49 +0.5 6,043,471 + AO353_27720 0.49 -1.1 6,043,471 + AO353_27720 0.49 +0.8 6,043,472 - AO353_27720 0.49 -0.7 6,043,472 - AO353_27720 0.49 -0.2 6,043,615 + AO353_27720 0.61 -0.4 6,043,615 + AO353_27720 0.61 +3.0 6,043,762 + AO353_27720 0.74 -1.0 6,044,068 + -0.9 6,044,068 + +0.0 6,044,079 + -0.7 6,044,079 + -1.3 6,044,079 + +0.9 6,044,280 + AO353_27725 0.51 +0.8 6,044,281 - AO353_27725 0.52 -0.7 6,044,402 + AO353_27725 0.80 +2.0 6,044,402 + AO353_27725 0.80 -2.3 6,044,403 - AO353_27725 0.80 +0.3 6,044,403 - AO353_27725 0.80 -1.9 6,044,403 - AO353_27725 0.80 -1.0 6,044,403 - AO353_27725 0.80 +0.2 6,044,403 - AO353_27725 0.80 -0.6 6,044,488 - +0.0 6,044,543 - -1.3 6,044,632 - -0.7 6,044,703 + +0.6 6,044,703 + +0.5 6,044,704 - -1.3 6,044,704 - -1.5 6,044,717 - +0.8 6,044,889 + AO353_27730 0.19 +0.0 6,044,969 - AO353_27730 0.29 -1.1 6,045,051 + AO353_27730 0.39 +0.7 6,045,051 + AO353_27730 0.39 -0.4 6,045,051 + AO353_27730 0.39 -0.4 6,045,051 + AO353_27730 0.39 +0.0 6,045,051 + AO353_27730 0.39 -0.1 6,045,051 + AO353_27730 0.39 -0.5 6,045,051 + AO353_27730 0.39 -1.5 6,045,052 - AO353_27730 0.40 +0.6 6,045,052 - AO353_27730 0.40 -0.1 6,045,052 - AO353_27730 0.40 -0.4 6,045,052 - AO353_27730 0.40 -0.4 6,045,052 - AO353_27730 0.40 -1.0 6,045,052 - AO353_27730 0.40 -0.2
Or see this region's nucleotide sequence