Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26875 and AO353_26880 are separated by 53 nucleotides AO353_26880 and AO353_26885 are separated by 21 nucleotides
AO353_26875: AO353_26875 - 2-dehydro-3-deoxygluconokinase, at 5,891,100 to 5,892,080
_26875
AO353_26880: AO353_26880 - MFS transporter, at 5,892,134 to 5,893,432
_26880
AO353_26885: AO353_26885 - phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) <small>(from data)</small>, at 5,893,454 to 5,894,440
_26885
Position (kb) 5892
5893
5894 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5891.217 kb on - strand, within AO353_26875 at 5891.217 kb on - strand, within AO353_26875 at 5891.217 kb on - strand, within AO353_26875 at 5891.377 kb on + strand, within AO353_26875 at 5891.377 kb on + strand, within AO353_26875 at 5891.378 kb on - strand, within AO353_26875 at 5891.378 kb on - strand, within AO353_26875 at 5891.378 kb on - strand, within AO353_26875 at 5891.418 kb on + strand, within AO353_26875 at 5891.418 kb on + strand, within AO353_26875 at 5891.418 kb on + strand, within AO353_26875 at 5891.748 kb on + strand, within AO353_26875 at 5891.749 kb on - strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.802 kb on + strand, within AO353_26875 at 5891.803 kb on - strand, within AO353_26875 at 5891.803 kb on - strand, within AO353_26875 at 5891.803 kb on - strand, within AO353_26875 at 5891.833 kb on + strand, within AO353_26875 at 5892.130 kb on + strand at 5892.131 kb on - strand at 5892.170 kb on + strand at 5892.170 kb on + strand at 5892.170 kb on + strand at 5892.170 kb on + strand at 5892.170 kb on + strand at 5892.170 kb on + strand at 5892.190 kb on + strand at 5892.191 kb on - strand at 5892.191 kb on - strand at 5892.197 kb on + strand at 5892.197 kb on + strand at 5892.198 kb on - strand at 5892.210 kb on - strand at 5892.210 kb on - strand at 5892.210 kb on - strand at 5892.227 kb on + strand at 5892.227 kb on + strand at 5892.228 kb on - strand at 5892.228 kb on - strand at 5892.347 kb on + strand, within AO353_26880 at 5892.347 kb on + strand, within AO353_26880 at 5892.348 kb on - strand, within AO353_26880 at 5892.348 kb on - strand, within AO353_26880 at 5892.440 kb on + strand, within AO353_26880 at 5892.440 kb on + strand, within AO353_26880 at 5892.441 kb on - strand, within AO353_26880 at 5892.441 kb on - strand, within AO353_26880 at 5892.553 kb on + strand, within AO353_26880 at 5892.553 kb on + strand, within AO353_26880 at 5892.553 kb on + strand, within AO353_26880 at 5892.553 kb on + strand, within AO353_26880 at 5892.554 kb on - strand, within AO353_26880 at 5892.682 kb on + strand, within AO353_26880 at 5892.682 kb on + strand, within AO353_26880 at 5892.682 kb on + strand, within AO353_26880 at 5892.876 kb on - strand, within AO353_26880 at 5892.962 kb on + strand, within AO353_26880 at 5893.050 kb on + strand, within AO353_26880 at 5893.050 kb on + strand, within AO353_26880 at 5893.051 kb on - strand, within AO353_26880 at 5893.051 kb on - strand, within AO353_26880 at 5893.079 kb on + strand, within AO353_26880 at 5893.079 kb on + strand, within AO353_26880 at 5893.079 kb on + strand, within AO353_26880 at 5893.079 kb on + strand, within AO353_26880 at 5893.141 kb on + strand, within AO353_26880 at 5893.141 kb on + strand, within AO353_26880 at 5893.141 kb on + strand, within AO353_26880 at 5893.141 kb on + strand, within AO353_26880 at 5893.141 kb on + strand, within AO353_26880 at 5893.141 kb on + strand at 5893.142 kb on - strand at 5893.142 kb on - strand, within AO353_26880 at 5893.142 kb on - strand, within AO353_26880 at 5893.142 kb on - strand, within AO353_26880 at 5893.142 kb on - strand, within AO353_26880 at 5893.142 kb on - strand, within AO353_26880 at 5893.145 kb on + strand, within AO353_26880 at 5893.145 kb on + strand, within AO353_26880 at 5893.145 kb on + strand, within AO353_26880 at 5893.145 kb on + strand, within AO353_26880 at 5893.145 kb on + strand, within AO353_26880 at 5893.145 kb on + strand, within AO353_26880 at 5893.145 kb on + strand, within AO353_26880 at 5893.145 kb on + strand, within AO353_26880 at 5893.145 kb on + strand, within AO353_26880 at 5893.146 kb on - strand, within AO353_26880 at 5893.146 kb on - strand, within AO353_26880 at 5893.146 kb on - strand, within AO353_26880 at 5893.146 kb on - strand, within AO353_26880 at 5893.262 kb on + strand, within AO353_26880 at 5893.263 kb on - strand, within AO353_26880 at 5893.263 kb on - strand, within AO353_26880 at 5893.263 kb on - strand, within AO353_26880 at 5893.275 kb on - strand, within AO353_26880 at 5893.310 kb on + strand at 5893.345 kb on - strand at 5893.476 kb on - strand at 5893.691 kb on + strand, within AO353_26885 at 5893.691 kb on + strand, within AO353_26885 at 5893.692 kb on - strand, within AO353_26885 at 5893.692 kb on - strand, within AO353_26885 at 5893.692 kb on - strand, within AO353_26885 at 5893.692 kb on - strand, within AO353_26885 at 5893.692 kb on - strand, within AO353_26885 at 5893.704 kb on - strand, within AO353_26885 at 5893.881 kb on + strand, within AO353_26885 at 5893.881 kb on + strand, within AO353_26885 at 5893.882 kb on - strand, within AO353_26885 at 5893.882 kb on - strand, within AO353_26885 at 5893.882 kb on - strand, within AO353_26885 at 5893.882 kb on - strand, within AO353_26885 at 5893.882 kb on - strand, within AO353_26885 at 5893.882 kb on - strand at 5893.882 kb on - strand, within AO353_26885 at 5893.882 kb on - strand, within AO353_26885 at 5893.882 kb on - strand, within AO353_26885 at 5893.984 kb on + strand, within AO353_26885 at 5893.985 kb on - strand, within AO353_26885 at 5894.143 kb on + strand, within AO353_26885 at 5894.143 kb on + strand, within AO353_26885 at 5894.143 kb on + strand, within AO353_26885 at 5894.144 kb on - strand, within AO353_26885 at 5894.149 kb on + strand, within AO353_26885 at 5894.149 kb on + strand, within AO353_26885 at 5894.149 kb on + strand, within AO353_26885 at 5894.150 kb on - strand, within AO353_26885 at 5894.155 kb on + strand, within AO353_26885 at 5894.155 kb on + strand, within AO353_26885 at 5894.155 kb on + strand, within AO353_26885 at 5894.155 kb on + strand, within AO353_26885 at 5894.156 kb on - strand, within AO353_26885 at 5894.156 kb on - strand, within AO353_26885
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 5,891,217 - AO353_26875 0.12 -1.1 5,891,217 - AO353_26875 0.12 -0.4 5,891,217 - AO353_26875 0.12 +0.2 5,891,377 + AO353_26875 0.28 -0.0 5,891,377 + AO353_26875 0.28 -0.2 5,891,378 - AO353_26875 0.28 +1.4 5,891,378 - AO353_26875 0.28 +0.5 5,891,378 - AO353_26875 0.28 +1.2 5,891,418 + AO353_26875 0.32 +0.2 5,891,418 + AO353_26875 0.32 +0.3 5,891,418 + AO353_26875 0.32 +0.8 5,891,748 + AO353_26875 0.66 -2.7 5,891,749 - AO353_26875 0.66 +0.8 5,891,802 + AO353_26875 0.72 -0.9 5,891,802 + AO353_26875 0.72 -1.2 5,891,802 + AO353_26875 0.72 -0.0 5,891,802 + AO353_26875 0.72 -0.2 5,891,802 + AO353_26875 0.72 +1.2 5,891,803 - AO353_26875 0.72 -0.3 5,891,803 - AO353_26875 0.72 -1.6 5,891,803 - AO353_26875 0.72 -0.9 5,891,833 + AO353_26875 0.75 -0.2 5,892,130 + +3.3 5,892,131 - -1.6 5,892,170 + +0.1 5,892,170 + -1.6 5,892,170 + -1.5 5,892,170 + +1.7 5,892,170 + -0.1 5,892,170 + -1.6 5,892,190 + +0.6 5,892,191 - -1.3 5,892,191 - +1.0 5,892,197 + -0.4 5,892,197 + -0.0 5,892,198 - -0.6 5,892,210 - -0.0 5,892,210 - +0.4 5,892,210 - -0.4 5,892,227 + +0.3 5,892,227 + -0.1 5,892,228 - +0.3 5,892,228 - -0.0 5,892,347 + AO353_26880 0.16 -0.1 5,892,347 + AO353_26880 0.16 +0.8 5,892,348 - AO353_26880 0.16 -0.2 5,892,348 - AO353_26880 0.16 -0.0 5,892,440 + AO353_26880 0.24 -0.4 5,892,440 + AO353_26880 0.24 -0.0 5,892,441 - AO353_26880 0.24 -0.0 5,892,441 - AO353_26880 0.24 -3.4 5,892,553 + AO353_26880 0.32 -0.3 5,892,553 + AO353_26880 0.32 +0.2 5,892,553 + AO353_26880 0.32 +0.7 5,892,553 + AO353_26880 0.32 +0.7 5,892,554 - AO353_26880 0.32 -0.0 5,892,682 + AO353_26880 0.42 +1.5 5,892,682 + AO353_26880 0.42 -1.2 5,892,682 + AO353_26880 0.42 +0.2 5,892,876 - AO353_26880 0.57 +1.0 5,892,962 + AO353_26880 0.64 -0.0 5,893,050 + AO353_26880 0.71 -0.1 5,893,050 + AO353_26880 0.71 -0.0 5,893,051 - AO353_26880 0.71 -0.6 5,893,051 - AO353_26880 0.71 +1.3 5,893,079 + AO353_26880 0.73 -1.6 5,893,079 + AO353_26880 0.73 -0.8 5,893,079 + AO353_26880 0.73 +1.0 5,893,079 + AO353_26880 0.73 +1.0 5,893,141 + AO353_26880 0.78 -0.8 5,893,141 + AO353_26880 0.78 +0.6 5,893,141 + AO353_26880 0.78 -1.0 5,893,141 + AO353_26880 0.78 -0.2 5,893,141 + AO353_26880 0.78 -1.0 5,893,141 + -0.0 5,893,142 - +1.0 5,893,142 - AO353_26880 0.78 -0.6 5,893,142 - AO353_26880 0.78 -0.6 5,893,142 - AO353_26880 0.78 -0.6 5,893,142 - AO353_26880 0.78 -0.8 5,893,142 - AO353_26880 0.78 -0.9 5,893,145 + AO353_26880 0.78 +0.7 5,893,145 + AO353_26880 0.78 +1.0 5,893,145 + AO353_26880 0.78 -0.3 5,893,145 + AO353_26880 0.78 -0.8 5,893,145 + AO353_26880 0.78 -0.2 5,893,145 + AO353_26880 0.78 +0.1 5,893,145 + AO353_26880 0.78 +0.4 5,893,145 + AO353_26880 0.78 +0.7 5,893,145 + AO353_26880 0.78 +0.7 5,893,146 - AO353_26880 0.78 -0.9 5,893,146 - AO353_26880 0.78 -0.3 5,893,146 - AO353_26880 0.78 -1.1 5,893,146 - AO353_26880 0.78 +0.6 5,893,262 + AO353_26880 0.87 -1.6 5,893,263 - AO353_26880 0.87 +1.0 5,893,263 - AO353_26880 0.87 -0.5 5,893,263 - AO353_26880 0.87 -1.6 5,893,275 - AO353_26880 0.88 -0.2 5,893,310 + -0.3 5,893,345 - -0.6 5,893,476 - -0.4 5,893,691 + AO353_26885 0.24 +0.7 5,893,691 + AO353_26885 0.24 +1.2 5,893,692 - AO353_26885 0.24 -0.6 5,893,692 - AO353_26885 0.24 +1.6 5,893,692 - AO353_26885 0.24 +0.1 5,893,692 - AO353_26885 0.24 -1.8 5,893,692 - AO353_26885 0.24 +0.5 5,893,704 - AO353_26885 0.25 +0.5 5,893,881 + AO353_26885 0.43 -1.3 5,893,881 + AO353_26885 0.43 +0.4 5,893,882 - AO353_26885 0.43 -0.3 5,893,882 - AO353_26885 0.43 -1.2 5,893,882 - AO353_26885 0.43 -0.0 5,893,882 - AO353_26885 0.43 -0.0 5,893,882 - AO353_26885 0.43 +0.4 5,893,882 - -1.3 5,893,882 - AO353_26885 0.43 -0.3 5,893,882 - AO353_26885 0.43 -0.2 5,893,882 - AO353_26885 0.43 +0.5 5,893,984 + AO353_26885 0.54 -0.6 5,893,985 - AO353_26885 0.54 -0.0 5,894,143 + AO353_26885 0.70 -0.0 5,894,143 + AO353_26885 0.70 -0.8 5,894,143 + AO353_26885 0.70 -0.0 5,894,144 - AO353_26885 0.70 -0.6 5,894,149 + AO353_26885 0.70 -0.1 5,894,149 + AO353_26885 0.70 -0.9 5,894,149 + AO353_26885 0.70 +0.1 5,894,150 - AO353_26885 0.71 +0.4 5,894,155 + AO353_26885 0.71 +0.3 5,894,155 + AO353_26885 0.71 +0.7 5,894,155 + AO353_26885 0.71 -1.1 5,894,155 + AO353_26885 0.71 +0.4 5,894,156 - AO353_26885 0.71 +0.3 5,894,156 - AO353_26885 0.71 -0.2
Or see this region's nucleotide sequence