Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01710

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01700 and AO353_01705 are separated by 50 nucleotidesAO353_01705 and AO353_01710 overlap by 4 nucleotidesAO353_01710 and AO353_01715 are separated by 301 nucleotidesAO353_01715 and AO353_01720 are separated by 30 nucleotides AO353_01700: AO353_01700 - glutathione S-transferase, at 357,250 to 357,909 _01700 AO353_01705: AO353_01705 - alpha/beta hydrolase, at 357,960 to 358,811 _01705 AO353_01710: AO353_01710 - alpha/beta hydrolase, at 358,808 to 359,614 _01710 AO353_01715: AO353_01715 - esterase, at 359,916 to 360,359 _01715 AO353_01720: AO353_01720 - AMP-binding protein, at 360,390 to 362,057 _01720 Position (kb) 358 359 360Strain fitness (log2 ratio) -2 -1 0 1 2at 357.831 kb on + strand, within AO353_01700at 357.831 kb on + strand, within AO353_01700at 357.832 kb on - strand, within AO353_01700at 357.832 kb on - strand, within AO353_01700at 357.832 kb on - strand, within AO353_01700at 357.833 kb on + strand, within AO353_01700at 357.833 kb on + strand, within AO353_01700at 357.834 kb on - strand, within AO353_01700at 357.834 kb on - strand, within AO353_01700at 357.862 kb on - strandat 357.896 kb on + strandat 357.896 kb on + strandat 357.896 kb on + strandat 357.897 kb on - strandat 357.897 kb on - strandat 357.897 kb on - strandat 357.897 kb on - strandat 357.904 kb on + strandat 357.904 kb on + strandat 357.904 kb on + strandat 357.904 kb on + strandat 357.904 kb on + strandat 357.904 kb on + strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 358.062 kb on - strand, within AO353_01705at 358.226 kb on - strand, within AO353_01705at 358.264 kb on - strand, within AO353_01705at 358.264 kb on - strand, within AO353_01705at 358.305 kb on - strand, within AO353_01705at 358.336 kb on + strand, within AO353_01705at 358.337 kb on - strand, within AO353_01705at 358.337 kb on - strand, within AO353_01705at 358.577 kb on - strand, within AO353_01705at 358.939 kb on + strand, within AO353_01710at 359.010 kb on - strand, within AO353_01710at 359.010 kb on - strand, within AO353_01710at 359.058 kb on + strand, within AO353_01710at 359.058 kb on + strand, within AO353_01710at 359.058 kb on + strand, within AO353_01710at 359.058 kb on + strand, within AO353_01710at 359.058 kb on + strand, within AO353_01710at 359.059 kb on - strand, within AO353_01710at 359.059 kb on - strand, within AO353_01710at 359.059 kb on - strand, within AO353_01710at 359.059 kb on - strand, within AO353_01710at 359.059 kb on - strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.134 kb on - strand, within AO353_01710at 359.134 kb on - strand, within AO353_01710at 359.134 kb on - strand, within AO353_01710at 359.187 kb on + strand, within AO353_01710at 359.187 kb on + strand, within AO353_01710at 359.187 kb on + strand, within AO353_01710at 359.187 kb on + strand, within AO353_01710at 359.188 kb on - strand, within AO353_01710at 359.188 kb on - strand, within AO353_01710at 359.347 kb on - strand, within AO353_01710at 359.530 kb on - strand, within AO353_01710at 359.530 kb on - strand, within AO353_01710at 359.562 kb on + strandat 359.563 kb on - strandat 359.563 kb on - strandat 359.614 kb on + strandat 359.615 kb on - strandat 359.655 kb on + strandat 359.656 kb on - strandat 359.682 kb on + strandat 359.683 kb on - strandat 359.683 kb on - strandat 359.683 kb on - strandat 359.717 kb on - strandat 359.879 kb on + strandat 359.879 kb on + strandat 359.902 kb on + strandat 359.902 kb on + strandat 359.903 kb on - strandat 359.903 kb on - strandat 359.949 kb on + strandat 359.949 kb on + strandat 360.009 kb on - strand, within AO353_01715at 360.118 kb on + strand, within AO353_01715at 360.119 kb on - strand, within AO353_01715at 360.119 kb on - strand, within AO353_01715at 360.178 kb on - strand, within AO353_01715at 360.178 kb on - strand, within AO353_01715at 360.208 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.279 kb on + strand, within AO353_01715at 360.280 kb on - strand, within AO353_01715at 360.280 kb on - strand, within AO353_01715at 360.280 kb on - strand, within AO353_01715at 360.280 kb on - strand, within AO353_01715at 360.280 kb on - strand, within AO353_01715at 360.280 kb on - strand, within AO353_01715at 360.280 kb on - strand, within AO353_01715at 360.280 kb on - strand, within AO353_01715at 360.281 kb on + strand, within AO353_01715at 360.382 kb on - strandat 360.382 kb on - strandat 360.449 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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357,831 + AO353_01700 0.88 -1.2
357,831 + AO353_01700 0.88 +0.1
357,832 - AO353_01700 0.88 +0.0
357,832 - AO353_01700 0.88 +0.1
357,832 - AO353_01700 0.88 +0.8
357,833 + AO353_01700 0.88 +0.9
357,833 + AO353_01700 0.88 +0.8
357,834 - AO353_01700 0.88 -0.1
357,834 - AO353_01700 0.88 -0.4
357,862 - -0.9
357,896 + -0.1
357,896 + +1.9
357,896 + +0.9
357,897 - +1.4
357,897 - -0.0
357,897 - -1.6
357,897 - -1.3
357,904 + +0.4
357,904 + -1.7
357,904 + -0.0
357,904 + -0.6
357,904 + +0.0
357,904 + -0.4
357,905 - -0.6
357,905 - -0.2
357,905 - -0.2
357,905 - +1.1
357,905 - -0.5
357,905 - -0.3
357,905 - -1.2
357,905 - -1.5
357,905 - -0.6
357,905 - -1.9
358,062 - AO353_01705 0.12 -2.3
358,226 - AO353_01705 0.31 +0.8
358,264 - AO353_01705 0.36 -1.2
358,264 - AO353_01705 0.36 -0.4
358,305 - AO353_01705 0.40 +0.1
358,336 + AO353_01705 0.44 -2.0
358,337 - AO353_01705 0.44 -0.1
358,337 - AO353_01705 0.44 +0.3
358,577 - AO353_01705 0.72 +0.1
358,939 + AO353_01710 0.16 -0.1
359,010 - AO353_01710 0.25 +0.1
359,010 - AO353_01710 0.25 +2.3
359,058 + AO353_01710 0.31 -1.0
359,058 + AO353_01710 0.31 -0.1
359,058 + AO353_01710 0.31 -1.5
359,058 + AO353_01710 0.31 -1.3
359,058 + AO353_01710 0.31 -1.2
359,059 - AO353_01710 0.31 -1.0
359,059 - AO353_01710 0.31 -0.3
359,059 - AO353_01710 0.31 -0.1
359,059 - AO353_01710 0.31 -0.7
359,059 - AO353_01710 0.31 +0.6
359,133 + AO353_01710 0.40 -0.3
359,133 + AO353_01710 0.40 -0.9
359,133 + AO353_01710 0.40 -1.0
359,133 + AO353_01710 0.40 -0.3
359,133 + AO353_01710 0.40 -1.5
359,133 + AO353_01710 0.40 -0.6
359,133 + AO353_01710 0.40 -0.7
359,134 - AO353_01710 0.40 -0.3
359,134 - AO353_01710 0.40 +1.9
359,134 - AO353_01710 0.40 +0.1
359,187 + AO353_01710 0.47 -1.5
359,187 + AO353_01710 0.47 -0.8
359,187 + AO353_01710 0.47 -0.6
359,187 + AO353_01710 0.47 +0.8
359,188 - AO353_01710 0.47 -0.5
359,188 - AO353_01710 0.47 -0.6
359,347 - AO353_01710 0.67 -0.1
359,530 - AO353_01710 0.89 -1.6
359,530 - AO353_01710 0.89 -1.7
359,562 + +0.4
359,563 - -2.5
359,563 - -0.6
359,614 + +0.6
359,615 - +1.3
359,655 + -0.3
359,656 - -1.9
359,682 + -0.3
359,683 - +0.2
359,683 - -1.3
359,683 - -0.3
359,717 - -0.8
359,879 + -0.0
359,879 + +1.7
359,902 + +0.0
359,902 + +2.1
359,903 - -0.5
359,903 - -1.0
359,949 + -0.2
359,949 + +0.7
360,009 - AO353_01715 0.21 +1.3
360,118 + AO353_01715 0.45 +0.6
360,119 - AO353_01715 0.46 +0.1
360,119 - AO353_01715 0.46 +1.3
360,178 - AO353_01715 0.59 +0.3
360,178 - AO353_01715 0.59 -0.5
360,208 + AO353_01715 0.66 +0.0
360,279 + AO353_01715 0.82 -0.5
360,279 + AO353_01715 0.82 +0.1
360,279 + AO353_01715 0.82 -0.5
360,279 + AO353_01715 0.82 -0.7
360,279 + AO353_01715 0.82 -0.4
360,279 + AO353_01715 0.82 -1.5
360,279 + AO353_01715 0.82 -0.5
360,279 + AO353_01715 0.82 +0.3
360,279 + AO353_01715 0.82 -0.8
360,279 + AO353_01715 0.82 -0.6
360,279 + AO353_01715 0.82 +1.9
360,279 + AO353_01715 0.82 +0.6
360,279 + AO353_01715 0.82 +0.8
360,279 + AO353_01715 0.82 +1.9
360,280 - AO353_01715 0.82 +0.8
360,280 - AO353_01715 0.82 -0.3
360,280 - AO353_01715 0.82 -0.4
360,280 - AO353_01715 0.82 -0.0
360,280 - AO353_01715 0.82 +1.9
360,280 - AO353_01715 0.82 -0.4
360,280 - AO353_01715 0.82 -0.9
360,280 - AO353_01715 0.82 -0.7
360,281 + AO353_01715 0.82 +0.9
360,382 - -0.2
360,382 - -0.4
360,449 - +1.0

Or see this region's nucleotide sequence