Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4127

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4126 and Shewana3_4127 are separated by 203 nucleotidesShewana3_4127 and Shewana3_4128 are separated by 259 nucleotides Shewana3_4126: Shewana3_4126 - DeoR family transcriptional regulator (RefSeq), at 4,958,460 to 4,959,230 _4126 Shewana3_4127: Shewana3_4127 - TonB-dependent siderophore receptor (RefSeq), at 4,959,434 to 4,961,542 _4127 Shewana3_4128: Shewana3_4128 - glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase (RefSeq), at 4,961,802 to 4,963,166 _4128 Position (kb) 4959 4960 4961 4962Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4958.518 kb on - strandat 4958.576 kb on - strand, within Shewana3_4126at 4958.753 kb on - strand, within Shewana3_4126at 4958.821 kb on - strand, within Shewana3_4126at 4958.872 kb on - strand, within Shewana3_4126at 4958.879 kb on - strand, within Shewana3_4126at 4959.125 kb on - strand, within Shewana3_4126at 4959.160 kb on - strandat 4959.587 kb on - strandat 4959.635 kb on - strandat 4959.721 kb on - strand, within Shewana3_4127at 4960.017 kb on - strand, within Shewana3_4127at 4960.112 kb on + strand, within Shewana3_4127at 4960.314 kb on - strand, within Shewana3_4127at 4960.377 kb on - strand, within Shewana3_4127at 4960.539 kb on - strand, within Shewana3_4127at 4960.622 kb on - strand, within Shewana3_4127at 4960.624 kb on + strand, within Shewana3_4127at 4960.719 kb on + strand, within Shewana3_4127at 4960.750 kb on - strand, within Shewana3_4127at 4960.789 kb on + strand, within Shewana3_4127at 4960.884 kb on - strand, within Shewana3_4127at 4961.141 kb on + strand, within Shewana3_4127at 4961.152 kb on + strand, within Shewana3_4127at 4961.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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4,958,518 - -3.3
4,958,576 - Shewana3_4126 0.15 -1.5
4,958,753 - Shewana3_4126 0.38 -1.0
4,958,821 - Shewana3_4126 0.47 +0.6
4,958,872 - Shewana3_4126 0.53 -0.7
4,958,879 - Shewana3_4126 0.54 -0.9
4,959,125 - Shewana3_4126 0.86 +0.3
4,959,160 - +0.2
4,959,587 - +0.2
4,959,635 - -1.0
4,959,721 - Shewana3_4127 0.14 +0.4
4,960,017 - Shewana3_4127 0.28 -0.8
4,960,112 + Shewana3_4127 0.32 +0.2
4,960,314 - Shewana3_4127 0.42 +1.4
4,960,377 - Shewana3_4127 0.45 +3.2
4,960,539 - Shewana3_4127 0.52 +0.4
4,960,622 - Shewana3_4127 0.56 -0.9
4,960,624 + Shewana3_4127 0.56 +0.4
4,960,719 + Shewana3_4127 0.61 +0.5
4,960,750 - Shewana3_4127 0.62 +0.8
4,960,789 + Shewana3_4127 0.64 +0.5
4,960,884 - Shewana3_4127 0.69 +0.7
4,961,141 + Shewana3_4127 0.81 +0.6
4,961,152 + Shewana3_4127 0.81 -0.5
4,961,512 - +0.3

Or see this region's nucleotide sequence