Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4050

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4049 and Shewana3_4050 are separated by 276 nucleotidesShewana3_4050 and Shewana3_4051 are separated by 128 nucleotides Shewana3_4049: Shewana3_4049 - glutathione S-transferase domain-containing protein (RefSeq), at 4,865,141 to 4,865,788 _4049 Shewana3_4050: Shewana3_4050 - hypothetical protein (RefSeq), at 4,866,065 to 4,866,595 _4050 Shewana3_4051: Shewana3_4051 - oligopeptidase A (RefSeq), at 4,866,724 to 4,868,763 _4051 Position (kb) 4866 4867Strain fitness (log2 ratio) -3 -2 -1 0 1at 4865.307 kb on - strand, within Shewana3_4049at 4865.323 kb on - strand, within Shewana3_4049at 4865.407 kb on + strand, within Shewana3_4049at 4865.419 kb on + strand, within Shewana3_4049at 4865.866 kb on - strandat 4865.866 kb on - strandat 4865.881 kb on - strandat 4865.881 kb on - strandat 4866.144 kb on + strand, within Shewana3_4050at 4866.156 kb on + strand, within Shewana3_4050at 4866.212 kb on + strand, within Shewana3_4050at 4866.225 kb on - strand, within Shewana3_4050at 4866.230 kb on - strand, within Shewana3_4050at 4866.423 kb on - strand, within Shewana3_4050at 4866.423 kb on - strand, within Shewana3_4050at 4866.423 kb on - strand, within Shewana3_4050at 4866.515 kb on - strand, within Shewana3_4050at 4866.599 kb on - strandat 4866.625 kb on + strandat 4866.633 kb on - strandat 4866.721 kb on + strandat 4866.743 kb on - strandat 4866.805 kb on - strandat 4866.912 kb on + strandat 4867.196 kb on + strand, within Shewana3_4051at 4867.286 kb on - strand, within Shewana3_4051

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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4,865,307 - Shewana3_4049 0.26 -1.9
4,865,323 - Shewana3_4049 0.28 +0.1
4,865,407 + Shewana3_4049 0.41 +0.7
4,865,419 + Shewana3_4049 0.43 -0.7
4,865,866 - +0.2
4,865,866 - +0.4
4,865,881 - +0.6
4,865,881 - -1.4
4,866,144 + Shewana3_4050 0.15 +0.0
4,866,156 + Shewana3_4050 0.17 +1.1
4,866,212 + Shewana3_4050 0.28 -0.1
4,866,225 - Shewana3_4050 0.30 -0.6
4,866,230 - Shewana3_4050 0.31 -1.0
4,866,423 - Shewana3_4050 0.67 +1.3
4,866,423 - Shewana3_4050 0.67 +0.5
4,866,423 - Shewana3_4050 0.67 +1.0
4,866,515 - Shewana3_4050 0.85 -2.9
4,866,599 - +0.1
4,866,625 + -1.7
4,866,633 - +0.8
4,866,721 + +0.4
4,866,743 - +1.4
4,866,805 - -0.4
4,866,912 + -0.3
4,867,196 + Shewana3_4051 0.23 +1.2
4,867,286 - Shewana3_4051 0.28 -0.4

Or see this region's nucleotide sequence