Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3787

Experiment: Glycine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine (N)
4,546,762	+				-0.9
4,546,798	+				+0.3
4,546,808	-				+0.6
4,546,848	+				-1.0
4,546,848	+				-1.4
4,546,856	-				+0.6
4,546,858	+				-0.8
4,546,863	+				-0.5
4,546,872	-				+1.9
4,546,874	+				-0.5
4,546,874	+				+0.8
4,546,874	+				-0.9
4,546,874	+				-0.7
4,546,874	+				+0.0
4,546,874	+				-0.2
4,546,877	-				+0.4
4,546,882	-				+0.6
4,546,882	-				-2.4
4,546,882	-				+1.4
4,546,882	-				-1.6
4,546,882	-				+0.7
4,546,882	-				-1.8
4,546,899	-				+0.4
4,546,902	+				-3.7
4,546,903	+				+0.5
4,546,911	-				-1.0
4,546,915	-				-0.6
4,546,916	-				+2.9
4,546,922	-				-2.3
4,546,986	+				+1.9
4,546,994	-		Shewana3_3786	0.11	+0.7
4,546,994	-		Shewana3_3786	0.11	-1.9
4,547,025	+		Shewana3_3786	0.15	-1.3
4,547,056	+		Shewana3_3786	0.19	+0.6
4,547,056	+		Shewana3_3786	0.19	+0.8
4,547,061	+		Shewana3_3786	0.20	-0.7
4,547,066	+		Shewana3_3786	0.20	+0.2
4,547,066	+		Shewana3_3786	0.20	+0.2
4,547,066	+		Shewana3_3786	0.20	+1.0
4,547,074	-		Shewana3_3786	0.21	-0.7
4,547,077	+		Shewana3_3786	0.22	-1.5
4,547,098	-		Shewana3_3786	0.25	+1.4
4,547,108	-		Shewana3_3786	0.26	+0.2
4,547,182	+		Shewana3_3786	0.36	+2.8
4,547,206	+		Shewana3_3786	0.39	-0.9
4,547,281	+		Shewana3_3786	0.50	+0.8
4,547,286	+		Shewana3_3786	0.50	-0.2
4,547,291	+		Shewana3_3786	0.51	+1.0
4,547,291	+		Shewana3_3786	0.51	-0.1
4,547,291	+		Shewana3_3786	0.51	-0.4
4,547,291	+		Shewana3_3786	0.51	+1.2
4,547,294	-		Shewana3_3786	0.52	+1.5
4,547,299	-		Shewana3_3786	0.52	+0.3
4,547,299	-		Shewana3_3786	0.52	+0.7
4,547,299	-		Shewana3_3786	0.52	+0.6
4,547,299	-		Shewana3_3786	0.52	+2.6
4,547,352	+		Shewana3_3786	0.59	+0.9
4,547,375	+		Shewana3_3786	0.63	-1.3
4,547,376	-		Shewana3_3786	0.63	-2.3
4,547,376	-		Shewana3_3786	0.63	-0.0
4,547,390	+		Shewana3_3786	0.65	-1.6
4,547,390	+		Shewana3_3786	0.65	-0.5
4,547,408	+		Shewana3_3786	0.67	-2.1
4,547,408	+		Shewana3_3786	0.67	-0.9
4,547,408	+		Shewana3_3786	0.67	+0.9
4,547,408	+		Shewana3_3786	0.67	-1.4
4,547,408	+		Shewana3_3786	0.67	+0.7
4,547,416	-		Shewana3_3786	0.68	+0.6
4,547,416	-		Shewana3_3786	0.68	+0.0
4,547,455	-		Shewana3_3786	0.73	+2.4
4,547,483	+		Shewana3_3786	0.77	-0.6
4,547,512	+		Shewana3_3786	0.81	+0.2
4,547,512	+		Shewana3_3786	0.81	+0.5
4,547,546	+		Shewana3_3786	0.86	-0.8
4,547,546	+		Shewana3_3786	0.86	+2.6
4,547,554	-		Shewana3_3786	0.87	+0.6
4,547,587	+				-1.4
4,547,643	+				-1.2
4,547,651	-				+0.8
4,547,652	+				+0.9
4,547,655	+				-1.5
4,547,655	+				+1.8
4,547,655	+				-1.4
4,547,663	-				+2.9
4,547,663	-				+0.4
4,547,724	+				+0.5
4,547,724	+				-0.3
4,547,733	-				+1.7
4,547,767	+				+1.2
4,547,768	+				-1.1
4,547,775	-				+0.4
4,547,775	-				+0.5
4,547,779	+				+0.6
4,547,779	+				+0.5
4,547,779	+				-1.3
4,547,779	+				+0.4
4,547,779	+				+0.6
4,547,779	+				+1.6
4,547,779	+				-1.6
4,547,779	+				-0.8
4,547,779	+				-1.7
4,547,779	+				+0.7
4,547,787	-				+0.3
4,547,787	-				+1.0
4,547,787	-				+0.2
4,547,787	-				+1.5
4,547,787	-				-0.1
4,547,787	-				-0.3
4,547,787	-				-1.3
4,547,787	-				+0.5
4,547,787	-				-0.1
4,547,797	-				-0.3
4,547,844	-		Shewana3_3787	0.12	-0.3
4,547,860	+		Shewana3_3787	0.13	+0.3
4,547,874	+		Shewana3_3787	0.14	-1.8
4,547,874	+		Shewana3_3787	0.14	-0.0
4,547,879	+		Shewana3_3787	0.15	+0.6
4,547,882	-		Shewana3_3787	0.15	+2.7
4,547,915	+		Shewana3_3787	0.17	+0.4
4,547,922	+		Shewana3_3787	0.18	-0.8
4,547,923	-		Shewana3_3787	0.18	-0.4
4,547,923	-		Shewana3_3787	0.18	+0.3
4,547,930	-		Shewana3_3787	0.18	-1.5
4,547,964	+		Shewana3_3787	0.21	+1.0
4,548,028	+		Shewana3_3787	0.25	-1.3
4,548,028	+		Shewana3_3787	0.25	-1.1
4,548,035	-		Shewana3_3787	0.26	-1.9
4,548,046	-		Shewana3_3787	0.26	-0.8
4,548,051	+		Shewana3_3787	0.27	-1.1
4,548,074	+		Shewana3_3787	0.28	+0.5
4,548,074	+		Shewana3_3787	0.28	-0.7
4,548,172	+		Shewana3_3787	0.35	-0.4
4,548,180	+		Shewana3_3787	0.36	+0.6
4,548,180	+		Shewana3_3787	0.36	-1.0
4,548,180	-		Shewana3_3787	0.36	-1.5
4,548,188	-		Shewana3_3787	0.36	-2.0
4,548,188	-		Shewana3_3787	0.36	-0.0
4,548,188	-		Shewana3_3787	0.36	-1.2
4,548,193	-		Shewana3_3787	0.37	-0.2
4,548,302	+		Shewana3_3787	0.44	-0.6
4,548,314	+		Shewana3_3787	0.45	-0.8
4,548,314	+		Shewana3_3787	0.45	+0.8
4,548,314	+		Shewana3_3787	0.45	+0.9
4,548,322	-		Shewana3_3787	0.46	+0.0
4,548,347	+		Shewana3_3787	0.47	+0.4
4,548,356	-		Shewana3_3787	0.48	-1.3
4,548,375	+		Shewana3_3787	0.49	-0.1
4,548,383	-		Shewana3_3787	0.50	+0.1
4,548,403	+		Shewana3_3787	0.51	-0.4
4,548,403	-		Shewana3_3787	0.51	-0.9
4,548,419	+		Shewana3_3787	0.53	+0.2
4,548,458	+		Shewana3_3787	0.55	-1.0
4,548,468	+		Shewana3_3787	0.56	-0.8
4,548,468	+		Shewana3_3787	0.56	-0.6
4,548,468	+		Shewana3_3787	0.56	-0.2
4,548,468	+		Shewana3_3787	0.56	-0.2
4,548,468	+		Shewana3_3787	0.56	-1.1
4,548,476	-		Shewana3_3787	0.57	-0.1
4,548,476	-		Shewana3_3787	0.57	-1.3
4,548,476	-		Shewana3_3787	0.57	-0.3
4,548,476	-		Shewana3_3787	0.57	-1.1
4,548,485	+		Shewana3_3787	0.57	+0.0
4,548,487	+		Shewana3_3787	0.57	-0.4
4,548,492	+		Shewana3_3787	0.58	-0.5
4,548,495	-		Shewana3_3787	0.58	-0.5
4,548,560	+		Shewana3_3787	0.62	-2.8
4,548,568	-		Shewana3_3787	0.63	-1.0
4,548,568	-		Shewana3_3787	0.63	+0.7
4,548,640	+		Shewana3_3787	0.68	+0.7
4,548,648	-		Shewana3_3787	0.69	+0.2
4,548,689	+		Shewana3_3787	0.71	-0.7
4,548,712	+		Shewana3_3787	0.73	+1.4
4,548,712	+		Shewana3_3787	0.73	-1.5
4,548,719	+		Shewana3_3787	0.74	-1.8
4,548,719	+		Shewana3_3787	0.74	+0.7
4,548,720	-		Shewana3_3787	0.74	+0.5
4,548,720	-		Shewana3_3787	0.74	+1.3
4,548,720	-		Shewana3_3787	0.74	+1.6
4,548,809	+		Shewana3_3787	0.80	-2.4
4,548,809	+		Shewana3_3787	0.80	-0.9
4,548,817	-		Shewana3_3787	0.80	+0.6
4,548,880	+		Shewana3_3787	0.85	-0.7
4,548,903	+		Shewana3_3787	0.86	-1.6
4,548,903	+		Shewana3_3787	0.86	+0.7
4,548,911	-		Shewana3_3787	0.87	-1.1
4,548,911	-		Shewana3_3787	0.87	+0.2
4,548,911	-		Shewana3_3787	0.87	-2.9
4,548,936	+		Shewana3_3787	0.89	+0.6
4,548,944	-		Shewana3_3787	0.89	-0.3
4,548,945	+		Shewana3_3787	0.89	-0.5
4,548,955	-				-0.8
4,548,996	+				-2.4
4,549,004	-				+0.6
4,549,004	-				-3.5
4,549,004	-				+0.1
4,549,012	-				+0.3
4,549,027	+				+0.8
4,549,048	-				+0.4
4,549,059	+				+0.9
4,549,086	-				-2.7
4,549,185	-				-0.0
4,549,195	-				-0.6
4,549,243	+				-0.3
4,549,251	-				-1.5
4,549,251	-				+1.5
4,549,251	-				-1.1
4,549,256	-				+0.2
4,549,270	+				-0.2
4,549,278	+				+0.7
4,549,293	-				+0.8
4,549,318	+				+2.3
4,549,318	-				+0.5
4,549,346	-				+0.3
4,549,357	+				+0.3
4,549,357	+				+1.1
4,549,357	+				+0.2
4,549,456	+		Shewana3_3788	0.10	-0.4
4,549,462	+		Shewana3_3788	0.11	-0.0
4,549,467	+		Shewana3_3788	0.11	-0.3
4,549,478	-		Shewana3_3788	0.11	+0.1
4,549,524	-		Shewana3_3788	0.12	+1.0
4,549,619	+		Shewana3_3788	0.15	+0.2
4,549,619	+		Shewana3_3788	0.15	-0.9
4,549,627	-		Shewana3_3788	0.15	-0.6
4,549,630	+		Shewana3_3788	0.15	+1.4
4,549,722	-		Shewana3_3788	0.18	-3.1
4,549,722	-		Shewana3_3788	0.18	+1.1
4,549,818	-		Shewana3_3788	0.21	+0.3
4,549,823	+		Shewana3_3788	0.21	-0.8
4,549,943	+		Shewana3_3788	0.25	+0.1
4,549,943	+		Shewana3_3788	0.25	-1.6
4,549,978	-		Shewana3_3788	0.26	+0.0
4,550,003	+		Shewana3_3788	0.26	+0.4
4,550,011	-		Shewana3_3788	0.27	-1.1
4,550,070	+		Shewana3_3788	0.28	+0.2
4,550,078	-		Shewana3_3788	0.28	-1.0
4,550,078	-		Shewana3_3788	0.28	+0.3
4,550,081	+		Shewana3_3788	0.29	+0.1
4,550,088	+		Shewana3_3788	0.29	-0.9