Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3724 and Shewana3_3725 are separated by 241 nucleotides Shewana3_3725 and Shewana3_3726 overlap by 1 nucleotides Shewana3_3726 and Shewana3_3727 overlap by 4 nucleotides
Shewana3_3724: Shewana3_3724 - arginase/agmatinase/formiminoglutamase (RefSeq), at 4,466,829 to 4,467,881
_3724
Shewana3_3725: Shewana3_3725 - demethylmenaquinone methyltransferase (RefSeq), at 4,468,123 to 4,468,878
_3725
Shewana3_3726: Shewana3_3726 - hypothetical protein (RefSeq), at 4,468,878 to 4,469,498
_3726
Shewana3_3727: Shewana3_3727 - 2-octaprenylphenol hydroxylase (RefSeq), at 4,469,495 to 4,471,144
_3727
Position (kb)
4468
4469 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4467.178 kb on + strand, within Shewana3_3724 at 4467.183 kb on + strand, within Shewana3_3724 at 4467.191 kb on - strand, within Shewana3_3724 at 4467.270 kb on - strand, within Shewana3_3724 at 4467.444 kb on + strand, within Shewana3_3724 at 4467.463 kb on + strand, within Shewana3_3724 at 4467.700 kb on + strand, within Shewana3_3724 at 4467.738 kb on + strand, within Shewana3_3724 at 4467.755 kb on - strand, within Shewana3_3724 at 4467.778 kb on + strand at 4467.873 kb on + strand at 4467.947 kb on - strand at 4468.077 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 4,467,178 + Shewana3_3724 0.33 -2.5 4,467,183 + Shewana3_3724 0.34 -1.7 4,467,191 - Shewana3_3724 0.34 -1.5 4,467,270 - Shewana3_3724 0.42 -3.1 4,467,444 + Shewana3_3724 0.58 -0.7 4,467,463 + Shewana3_3724 0.60 -0.8 4,467,700 + Shewana3_3724 0.83 -4.6 4,467,738 + Shewana3_3724 0.86 -1.4 4,467,755 - Shewana3_3724 0.88 -0.9 4,467,778 + -1.2 4,467,873 + +0.6 4,467,947 - -0.8 4,468,077 + -0.7
Or see this region's nucleotide sequence