Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3601 and Shewana3_3602 are separated by 318 nucleotides Shewana3_3602 and Shewana3_3603 are separated by 158 nucleotides
Shewana3_3601: Shewana3_3601 - hypothetical protein (RefSeq), at 4,324,331 to 4,325,320
_3601
Shewana3_3602: Shewana3_3602 - hydratase/decarboxylase family protein (RefSeq), at 4,325,639 to 4,326,454
_3602
Shewana3_3603: Shewana3_3603 - TonB family protein (RefSeq), at 4,326,613 to 4,327,728
_3603
Position (kb)
4325
4326
4327 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4324.748 kb on + strand, within Shewana3_3601 at 4324.782 kb on + strand, within Shewana3_3601 at 4324.816 kb on + strand, within Shewana3_3601 at 4324.821 kb on + strand, within Shewana3_3601 at 4324.883 kb on + strand, within Shewana3_3601 at 4324.913 kb on - strand, within Shewana3_3601 at 4325.068 kb on + strand, within Shewana3_3601 at 4325.273 kb on + strand at 4325.490 kb on + strand at 4325.603 kb on + strand at 4325.611 kb on - strand at 4325.940 kb on + strand, within Shewana3_3602 at 4326.168 kb on - strand, within Shewana3_3602 at 4326.168 kb on - strand, within Shewana3_3602 at 4326.371 kb on + strand, within Shewana3_3602 at 4326.404 kb on + strand at 4326.412 kb on - strand at 4326.460 kb on + strand at 4326.497 kb on - strand at 4326.708 kb on + strand at 4327.141 kb on - strand, within Shewana3_3603 at 4327.150 kb on + strand, within Shewana3_3603 at 4327.164 kb on - strand, within Shewana3_3603 at 4327.213 kb on + strand, within Shewana3_3603 at 4327.218 kb on + strand, within Shewana3_3603 at 4327.221 kb on - strand, within Shewana3_3603 at 4327.223 kb on + strand, within Shewana3_3603
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 4,324,748 + Shewana3_3601 0.42 +0.3 4,324,782 + Shewana3_3601 0.46 +0.4 4,324,816 + Shewana3_3601 0.49 +0.6 4,324,821 + Shewana3_3601 0.49 +0.0 4,324,883 + Shewana3_3601 0.56 +0.9 4,324,913 - Shewana3_3601 0.59 +0.5 4,325,068 + Shewana3_3601 0.74 +0.5 4,325,273 + +0.3 4,325,490 + -2.1 4,325,603 + +0.1 4,325,611 - -0.7 4,325,940 + Shewana3_3602 0.37 +0.1 4,326,168 - Shewana3_3602 0.65 +0.7 4,326,168 - Shewana3_3602 0.65 -0.8 4,326,371 + Shewana3_3602 0.90 +0.8 4,326,404 + -0.1 4,326,412 - -0.3 4,326,460 + -0.1 4,326,497 - +0.1 4,326,708 + +0.3 4,327,141 - Shewana3_3603 0.47 +4.5 4,327,150 + Shewana3_3603 0.48 -2.7 4,327,164 - Shewana3_3603 0.49 -0.7 4,327,213 + Shewana3_3603 0.54 -0.0 4,327,218 + Shewana3_3603 0.54 -0.0 4,327,221 - Shewana3_3603 0.54 +0.6 4,327,223 + Shewana3_3603 0.55 +1.8
Or see this region's nucleotide sequence