Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3595

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3594 and Shewana3_3595 are separated by 197 nucleotidesShewana3_3595 and Shewana3_3596 are separated by 385 nucleotidesShewana3_3596 and Shewana3_3597 are separated by 65 nucleotides Shewana3_3594: Shewana3_3594 - peptidase M28 (RefSeq), at 4,316,530 to 4,317,570 _3594 Shewana3_3595: Shewana3_3595 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 4,317,768 to 4,319,627 _3595 Shewana3_3596: Shewana3_3596 - hypothetical protein (RefSeq), at 4,320,013 to 4,320,384 _3596 Shewana3_3597: Shewana3_3597 - major facilitator transporter (RefSeq), at 4,320,450 to 4,321,646 _3597 Position (kb) 4317 4318 4319 4320Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4316.794 kb on - strand, within Shewana3_3594at 4316.827 kb on - strand, within Shewana3_3594at 4317.074 kb on - strand, within Shewana3_3594at 4317.122 kb on + strand, within Shewana3_3594at 4317.342 kb on + strand, within Shewana3_3594at 4317.350 kb on - strand, within Shewana3_3594at 4317.364 kb on + strand, within Shewana3_3594at 4317.396 kb on + strand, within Shewana3_3594at 4317.404 kb on - strand, within Shewana3_3594at 4317.874 kb on + strandat 4318.168 kb on + strand, within Shewana3_3595at 4318.202 kb on + strand, within Shewana3_3595at 4318.319 kb on + strand, within Shewana3_3595at 4318.467 kb on + strand, within Shewana3_3595at 4318.835 kb on + strand, within Shewana3_3595at 4318.888 kb on + strand, within Shewana3_3595at 4318.888 kb on + strand, within Shewana3_3595at 4319.116 kb on + strand, within Shewana3_3595at 4319.552 kb on + strandat 4319.622 kb on + strandat 4319.901 kb on - strandat 4319.957 kb on + strandat 4319.984 kb on + strandat 4320.128 kb on + strand, within Shewana3_3596at 4320.128 kb on + strand, within Shewana3_3596at 4320.128 kb on + strand, within Shewana3_3596at 4320.197 kb on - strand, within Shewana3_3596at 4320.299 kb on + strand, within Shewana3_3596at 4320.328 kb on - strand, within Shewana3_3596at 4320.463 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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4,316,794 - Shewana3_3594 0.25 -2.9
4,316,827 - Shewana3_3594 0.29 +0.3
4,317,074 - Shewana3_3594 0.52 +0.5
4,317,122 + Shewana3_3594 0.57 +0.6
4,317,342 + Shewana3_3594 0.78 +0.7
4,317,350 - Shewana3_3594 0.79 -1.2
4,317,364 + Shewana3_3594 0.80 -0.2
4,317,396 + Shewana3_3594 0.83 +0.7
4,317,404 - Shewana3_3594 0.84 -0.1
4,317,874 + -1.9
4,318,168 + Shewana3_3595 0.22 -1.6
4,318,202 + Shewana3_3595 0.23 -3.2
4,318,319 + Shewana3_3595 0.30 -1.9
4,318,467 + Shewana3_3595 0.38 -3.3
4,318,835 + Shewana3_3595 0.57 -2.1
4,318,888 + Shewana3_3595 0.60 -2.4
4,318,888 + Shewana3_3595 0.60 -1.6
4,319,116 + Shewana3_3595 0.72 -1.1
4,319,552 + -0.1
4,319,622 + +1.2
4,319,901 - -0.9
4,319,957 + -0.8
4,319,984 + +2.3
4,320,128 + Shewana3_3596 0.31 +0.8
4,320,128 + Shewana3_3596 0.31 -1.0
4,320,128 + Shewana3_3596 0.31 +0.1
4,320,197 - Shewana3_3596 0.49 -0.3
4,320,299 + Shewana3_3596 0.77 +0.5
4,320,328 - Shewana3_3596 0.85 +0.4
4,320,463 - -1.6

Or see this region's nucleotide sequence