Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3097

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3096 and Shewana3_3097 are separated by 159 nucleotidesShewana3_3097 and Shewana3_3098 are separated by 554 nucleotides Shewana3_3096: Shewana3_3096 - spermidine/putrescine ABC transporter ATPase subunit (RefSeq), at 3,713,741 to 3,714,877 _3096 Shewana3_3097: Shewana3_3097 - extracellular solute-binding protein (RefSeq), at 3,715,037 to 3,716,200 _3097 Shewana3_3098: Shewana3_3098 - L-glutamine synthetase (RefSeq), at 3,716,755 to 3,718,110 _3098 Position (kb) 3715 3716 3717Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3714.118 kb on - strand, within Shewana3_3096at 3714.154 kb on - strand, within Shewana3_3096at 3714.195 kb on - strand, within Shewana3_3096at 3714.267 kb on - strand, within Shewana3_3096at 3714.367 kb on + strand, within Shewana3_3096at 3714.796 kb on - strandat 3714.810 kb on + strandat 3714.818 kb on - strandat 3714.859 kb on + strandat 3715.078 kb on - strandat 3715.184 kb on - strand, within Shewana3_3097at 3715.206 kb on + strand, within Shewana3_3097at 3715.214 kb on - strand, within Shewana3_3097at 3715.686 kb on + strand, within Shewana3_3097at 3715.806 kb on + strand, within Shewana3_3097at 3715.806 kb on + strand, within Shewana3_3097at 3715.907 kb on + strand, within Shewana3_3097at 3715.915 kb on - strand, within Shewana3_3097at 3716.013 kb on - strand, within Shewana3_3097at 3716.020 kb on - strand, within Shewana3_3097at 3716.201 kb on - strandat 3716.292 kb on - strandat 3716.708 kb on - strandat 3716.925 kb on - strand, within Shewana3_3098at 3716.993 kb on - strand, within Shewana3_3098at 3716.993 kb on - strand, within Shewana3_3098at 3717.033 kb on - strand, within Shewana3_3098at 3717.133 kb on - strand, within Shewana3_3098

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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3,714,118 - Shewana3_3096 0.33 +1.5
3,714,154 - Shewana3_3096 0.36 -0.2
3,714,195 - Shewana3_3096 0.40 -3.8
3,714,267 - Shewana3_3096 0.46 +0.3
3,714,367 + Shewana3_3096 0.55 -1.1
3,714,796 - -2.0
3,714,810 + -1.3
3,714,818 - -1.2
3,714,859 + -1.1
3,715,078 - -2.3
3,715,184 - Shewana3_3097 0.13 -1.1
3,715,206 + Shewana3_3097 0.15 -1.9
3,715,214 - Shewana3_3097 0.15 -3.2
3,715,686 + Shewana3_3097 0.56 -1.0
3,715,806 + Shewana3_3097 0.66 -0.3
3,715,806 + Shewana3_3097 0.66 -0.4
3,715,907 + Shewana3_3097 0.75 +1.1
3,715,915 - Shewana3_3097 0.75 -2.4
3,716,013 - Shewana3_3097 0.84 -2.2
3,716,020 - Shewana3_3097 0.84 -0.8
3,716,201 - +0.5
3,716,292 - +1.4
3,716,708 - +1.1
3,716,925 - Shewana3_3098 0.13 +0.8
3,716,993 - Shewana3_3098 0.18 -0.4
3,716,993 - Shewana3_3098 0.18 -1.6
3,717,033 - Shewana3_3098 0.21 -1.6
3,717,133 - Shewana3_3098 0.28 -0.3

Or see this region's nucleotide sequence