Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3049

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3048 and Shewana3_3049 overlap by 1 nucleotidesShewana3_3049 and gltB are separated by 348 nucleotides Shewana3_3048: Shewana3_3048 - putative radical SAM protein (RefSeq), at 3,652,700 to 3,653,629 _3048 Shewana3_3049: Shewana3_3049 - no description, at 3,653,629 to 3,653,868 _3049 Shewana3_3050: gltB - glutamate synthase subunit alpha (RefSeq), at 3,654,217 to 3,658,665 gltB Position (kb) 3653 3654Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3652.709 kb on + strandat 3652.709 kb on + strandat 3652.726 kb on + strandat 3652.868 kb on - strand, within Shewana3_3048at 3652.894 kb on + strand, within Shewana3_3048at 3652.902 kb on - strand, within Shewana3_3048at 3652.902 kb on - strand, within Shewana3_3048at 3652.909 kb on + strand, within Shewana3_3048at 3652.912 kb on - strand, within Shewana3_3048at 3652.912 kb on - strand, within Shewana3_3048at 3652.957 kb on - strand, within Shewana3_3048at 3652.983 kb on - strand, within Shewana3_3048at 3653.059 kb on - strand, within Shewana3_3048at 3653.082 kb on - strand, within Shewana3_3048at 3653.144 kb on - strand, within Shewana3_3048at 3653.154 kb on + strand, within Shewana3_3048at 3653.343 kb on - strand, within Shewana3_3048at 3653.414 kb on + strand, within Shewana3_3048at 3653.445 kb on - strand, within Shewana3_3048at 3653.542 kb on - strandat 3654.547 kb on + strandat 3654.555 kb on - strandat 3654.620 kb on - strandat 3654.782 kb on - strand, within gltBat 3654.789 kb on - strand, within gltB

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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3,652,709 + -0.2
3,652,709 + +0.3
3,652,726 + -1.2
3,652,868 - Shewana3_3048 0.18 +0.1
3,652,894 + Shewana3_3048 0.21 -2.9
3,652,902 - Shewana3_3048 0.22 +0.1
3,652,902 - Shewana3_3048 0.22 -0.1
3,652,909 + Shewana3_3048 0.22 -1.5
3,652,912 - Shewana3_3048 0.23 +0.5
3,652,912 - Shewana3_3048 0.23 -0.5
3,652,957 - Shewana3_3048 0.28 +2.2
3,652,983 - Shewana3_3048 0.30 -0.4
3,653,059 - Shewana3_3048 0.39 +0.2
3,653,082 - Shewana3_3048 0.41 -0.3
3,653,144 - Shewana3_3048 0.48 +0.3
3,653,154 + Shewana3_3048 0.49 +0.2
3,653,343 - Shewana3_3048 0.69 +0.3
3,653,414 + Shewana3_3048 0.77 +0.4
3,653,445 - Shewana3_3048 0.80 +0.5
3,653,542 - +2.0
3,654,547 + -1.6
3,654,555 - -3.9
3,654,620 - -4.8
3,654,782 - gltB Shewana3_3050 0.13 -4.4
3,654,789 - gltB Shewana3_3050 0.13 -4.5

Or see this region's nucleotide sequence