Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2772 and Shewana3_2773 are separated by 69 nucleotides Shewana3_2773 and Shewana3_2774 are separated by 84 nucleotides Shewana3_2774 and Shewana3_2775 are separated by 84 nucleotides
Shewana3_2772: Shewana3_2772 - homoserine O-succinyltransferase (RefSeq), at 3,311,879 to 3,312,820
_2772
Shewana3_2773: Shewana3_2773 - hypothetical protein (RefSeq), at 3,312,890 to 3,313,324
_2773
Shewana3_2774: Shewana3_2774 - short chain dehydrogenase family protein (RefSeq), at 3,313,409 to 3,314,185
_2774
Shewana3_2775: Shewana3_2775 - outer membrane protein W (RefSeq), at 3,314,270 to 3,314,926
_2775
Position (kb)
3312
3313
3314 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3312.016 kb on - strand, within Shewana3_2772 at 3312.154 kb on + strand, within Shewana3_2772 at 3312.154 kb on + strand, within Shewana3_2772 at 3312.419 kb on - strand, within Shewana3_2772 at 3313.031 kb on - strand, within Shewana3_2773 at 3313.033 kb on + strand, within Shewana3_2773 at 3313.033 kb on + strand, within Shewana3_2773 at 3313.137 kb on - strand, within Shewana3_2773 at 3313.192 kb on - strand, within Shewana3_2773 at 3313.241 kb on - strand, within Shewana3_2773 at 3313.264 kb on - strand, within Shewana3_2773 at 3313.306 kb on + strand at 3313.314 kb on - strand at 3313.321 kb on - strand at 3313.676 kb on + strand, within Shewana3_2774 at 3313.713 kb on + strand, within Shewana3_2774 at 3313.767 kb on + strand, within Shewana3_2774 at 3313.892 kb on - strand, within Shewana3_2774 at 3313.925 kb on - strand, within Shewana3_2774 at 3314.185 kb on + strand at 3314.277 kb on + strand at 3314.310 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 3,312,016 - Shewana3_2772 0.15 -5.9 3,312,154 + Shewana3_2772 0.29 -5.6 3,312,154 + Shewana3_2772 0.29 -4.4 3,312,419 - Shewana3_2772 0.57 -5.4 3,313,031 - Shewana3_2773 0.32 +0.5 3,313,033 + Shewana3_2773 0.33 -4.2 3,313,033 + Shewana3_2773 0.33 -2.0 3,313,137 - Shewana3_2773 0.57 -0.5 3,313,192 - Shewana3_2773 0.69 -0.4 3,313,241 - Shewana3_2773 0.81 -1.2 3,313,264 - Shewana3_2773 0.86 +0.3 3,313,306 + -3.3 3,313,314 - +0.3 3,313,321 - -0.9 3,313,676 + Shewana3_2774 0.34 -0.2 3,313,713 + Shewana3_2774 0.39 -0.7 3,313,767 + Shewana3_2774 0.46 -0.2 3,313,892 - Shewana3_2774 0.62 -0.4 3,313,925 - Shewana3_2774 0.66 -0.1 3,314,185 + -0.8 3,314,277 + -1.4 3,314,310 - -0.1
Or see this region's nucleotide sequence