Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2698

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2697 and Shewana3_2698 overlap by 11 nucleotidesShewana3_2698 and Shewana3_2699 are separated by 20 nucleotides Shewana3_2697: Shewana3_2697 - N-acetylglucosamine 6-phosphate deacetylase (RefSeq), at 3,223,185 to 3,224,369 _2697 Shewana3_2698: Shewana3_2698 - N-acetylglucosamine kinase (RefSeq), at 3,224,359 to 3,225,285 _2698 Shewana3_2699: Shewana3_2699 - sugar isomerase (SIS) (RefSeq), at 3,225,306 to 3,226,466 _2699 Position (kb) 3224 3225 3226Strain fitness (log2 ratio) -2 -1 0 1at 3223.375 kb on - strand, within Shewana3_2697at 3223.745 kb on - strand, within Shewana3_2697at 3223.814 kb on + strand, within Shewana3_2697at 3223.883 kb on - strand, within Shewana3_2697at 3224.324 kb on + strandat 3224.662 kb on - strand, within Shewana3_2698at 3224.664 kb on + strand, within Shewana3_2698at 3224.715 kb on + strand, within Shewana3_2698at 3224.723 kb on - strand, within Shewana3_2698at 3224.723 kb on - strand, within Shewana3_2698at 3224.754 kb on - strand, within Shewana3_2698at 3225.044 kb on - strand, within Shewana3_2698at 3225.094 kb on - strand, within Shewana3_2698at 3225.128 kb on - strand, within Shewana3_2698at 3225.364 kb on + strandat 3225.378 kb on - strandat 3225.683 kb on + strand, within Shewana3_2699at 3225.691 kb on - strand, within Shewana3_2699at 3225.799 kb on + strand, within Shewana3_2699at 3225.799 kb on + strand, within Shewana3_2699at 3225.799 kb on + strand, within Shewana3_2699at 3225.807 kb on - strand, within Shewana3_2699at 3225.807 kb on - strand, within Shewana3_2699at 3225.905 kb on - strand, within Shewana3_2699at 3226.083 kb on + strand, within Shewana3_2699at 3226.127 kb on + strand, within Shewana3_2699at 3226.127 kb on + strand, within Shewana3_2699at 3226.194 kb on - strand, within Shewana3_2699at 3226.261 kb on - strand, within Shewana3_2699

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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3,223,375 - Shewana3_2697 0.16 -0.7
3,223,745 - Shewana3_2697 0.47 +0.5
3,223,814 + Shewana3_2697 0.53 -2.7
3,223,883 - Shewana3_2697 0.59 +0.6
3,224,324 + +0.7
3,224,662 - Shewana3_2698 0.33 +0.3
3,224,664 + Shewana3_2698 0.33 -1.2
3,224,715 + Shewana3_2698 0.38 +0.2
3,224,723 - Shewana3_2698 0.39 +0.2
3,224,723 - Shewana3_2698 0.39 +0.8
3,224,754 - Shewana3_2698 0.43 -0.0
3,225,044 - Shewana3_2698 0.74 -1.8
3,225,094 - Shewana3_2698 0.79 +0.3
3,225,128 - Shewana3_2698 0.83 -1.3
3,225,364 + +0.0
3,225,378 - +0.1
3,225,683 + Shewana3_2699 0.32 -0.5
3,225,691 - Shewana3_2699 0.33 -2.5
3,225,799 + Shewana3_2699 0.42 +0.9
3,225,799 + Shewana3_2699 0.42 +0.5
3,225,799 + Shewana3_2699 0.42 -1.6
3,225,807 - Shewana3_2699 0.43 +0.2
3,225,807 - Shewana3_2699 0.43 -0.2
3,225,905 - Shewana3_2699 0.52 -1.1
3,226,083 + Shewana3_2699 0.67 -1.4
3,226,127 + Shewana3_2699 0.71 +0.8
3,226,127 + Shewana3_2699 0.71 -2.1
3,226,194 - Shewana3_2699 0.76 +0.9
3,226,261 - Shewana3_2699 0.82 +0.6

Or see this region's nucleotide sequence