Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2570

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2568 and Shewana3_2569 are separated by 433 nucleotidesShewana3_2569 and rrmA are separated by 306 nucleotidesrrmA and Shewana3_2571 are separated by 33 nucleotides Shewana3_2568: Shewana3_2568 - sulphate transporter (RefSeq), at 3,071,714 to 3,073,273 _2568 Shewana3_2569: Shewana3_2569 - cold-shock DNA-binding protein family protein (RefSeq), at 3,073,707 to 3,073,916 _2569 Shewana3_2570: rrmA - 23S rRNA methyltransferase A (RefSeq), at 3,074,223 to 3,075,038 rrmA Shewana3_2571: Shewana3_2571 - hypothetical protein (RefSeq), at 3,075,072 to 3,075,878 _2571 Position (kb) 3074 3075 3076Strain fitness (log2 ratio) -2 -1 0 1at 3073.473 kb on + strandat 3073.497 kb on - strandat 3074.282 kb on + strandat 3074.492 kb on - strand, within rrmAat 3074.674 kb on + strand, within rrmAat 3074.674 kb on + strand, within rrmAat 3074.700 kb on - strand, within rrmAat 3074.745 kb on + strand, within rrmAat 3075.139 kb on - strandat 3075.262 kb on + strand, within Shewana3_2571at 3075.591 kb on + strand, within Shewana3_2571at 3075.810 kb on + strandat 3075.811 kb on + strandat 3075.811 kb on + strandat 3075.819 kb on - strandat 3075.819 kb on - strandat 3075.828 kb on + strandat 3075.841 kb on - strandat 3075.893 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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3,073,473 + +1.3
3,073,497 - +0.1
3,074,282 + -1.7
3,074,492 - rrmA Shewana3_2570 0.33 +1.0
3,074,674 + rrmA Shewana3_2570 0.55 +0.3
3,074,674 + rrmA Shewana3_2570 0.55 +0.5
3,074,700 - rrmA Shewana3_2570 0.58 +0.0
3,074,745 + rrmA Shewana3_2570 0.64 -0.7
3,075,139 - -1.7
3,075,262 + Shewana3_2571 0.24 -0.6
3,075,591 + Shewana3_2571 0.64 +1.4
3,075,810 + -1.3
3,075,811 + -1.0
3,075,811 + +0.2
3,075,819 - -1.3
3,075,819 - -2.5
3,075,828 + +0.3
3,075,841 - +0.1
3,075,893 + -1.5

Or see this region's nucleotide sequence