Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1905

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1903 and Shewana3_1904 are separated by 73 nucleotidesShewana3_1904 and Shewana3_1905 are separated by 360 nucleotidesShewana3_1905 and Shewana3_1906 are separated by 28 nucleotidesShewana3_1906 and Shewana3_1907 are separated by 82 nucleotides Shewana3_1903: Shewana3_1903 - restriction endonuclease (RefSeq), at 2,259,683 to 2,261,605 _1903 Shewana3_1904: Shewana3_1904 - GCN5-related N-acetyltransferase (RefSeq), at 2,261,679 to 2,262,101 _1904 Shewana3_1905: Shewana3_1905 - hypothetical protein (RefSeq), at 2,262,462 to 2,262,698 _1905 Shewana3_1906: Shewana3_1906 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,262,727 to 2,263,464 _1906 Shewana3_1907: Shewana3_1907 - iron-containing alcohol dehydrogenase (RefSeq), at 2,263,547 to 2,264,617 _1907 Position (kb) 2262 2263Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2261.635 kb on + strandat 2261.636 kb on + strandat 2261.744 kb on + strand, within Shewana3_1904at 2262.050 kb on - strand, within Shewana3_1904at 2262.098 kb on - strandat 2262.161 kb on - strandat 2262.245 kb on - strandat 2262.385 kb on + strandat 2262.646 kb on - strand, within Shewana3_1905at 2262.745 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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2,261,635 + +0.4
2,261,636 + -1.0
2,261,744 + Shewana3_1904 0.15 -0.1
2,262,050 - Shewana3_1904 0.88 +3.8
2,262,098 - -0.1
2,262,161 - -0.7
2,262,245 - -0.1
2,262,385 + -0.7
2,262,646 - Shewana3_1905 0.78 +0.6
2,262,745 - -3.0

Or see this region's nucleotide sequence