Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1063 and Shewana3_1064 are separated by 34 nucleotides Shewana3_1064 and Shewana3_1065 overlap by 14 nucleotides
Shewana3_1063: Shewana3_1063 - hypothetical protein (RefSeq), at 1,249,155 to 1,249,871
_1063
Shewana3_1064: Shewana3_1064 - peptidase U32 (RefSeq), at 1,249,906 to 1,250,823
_1064
Shewana3_1065: Shewana3_1065 - peptidase U32 (RefSeq), at 1,250,810 to 1,251,811
_1065
Position (kb)
1249
1250
1251 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1249.105 kb on - strand at 1249.122 kb on + strand at 1249.251 kb on - strand, within Shewana3_1063 at 1249.580 kb on + strand, within Shewana3_1063 at 1249.600 kb on - strand, within Shewana3_1063 at 1249.703 kb on + strand, within Shewana3_1063 at 1249.703 kb on + strand, within Shewana3_1063 at 1249.880 kb on - strand at 1250.032 kb on + strand, within Shewana3_1064 at 1250.250 kb on + strand, within Shewana3_1064 at 1250.258 kb on - strand, within Shewana3_1064 at 1250.348 kb on + strand, within Shewana3_1064 at 1250.356 kb on - strand, within Shewana3_1064 at 1250.356 kb on - strand, within Shewana3_1064 at 1250.356 kb on - strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.366 kb on - strand, within Shewana3_1064 at 1250.366 kb on - strand, within Shewana3_1064 at 1250.833 kb on + strand at 1250.959 kb on + strand, within Shewana3_1065 at 1250.972 kb on - strand, within Shewana3_1065 at 1250.976 kb on - strand, within Shewana3_1065 at 1250.978 kb on + strand, within Shewana3_1065 at 1251.045 kb on - strand, within Shewana3_1065 at 1251.045 kb on - strand, within Shewana3_1065 at 1251.045 kb on - strand, within Shewana3_1065 at 1251.129 kb on - strand, within Shewana3_1065 at 1251.202 kb on + strand, within Shewana3_1065 at 1251.210 kb on - strand, within Shewana3_1065 at 1251.284 kb on + strand, within Shewana3_1065 at 1251.389 kb on + strand, within Shewana3_1065 at 1251.397 kb on - strand, within Shewana3_1065 at 1251.458 kb on + strand, within Shewana3_1065
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 1,249,105 - -0.4 1,249,122 + +0.1 1,249,251 - Shewana3_1063 0.13 +1.1 1,249,580 + Shewana3_1063 0.59 -3.2 1,249,600 - Shewana3_1063 0.62 +0.2 1,249,703 + Shewana3_1063 0.76 +0.6 1,249,703 + Shewana3_1063 0.76 +0.4 1,249,880 - +0.4 1,250,032 + Shewana3_1064 0.14 -0.2 1,250,250 + Shewana3_1064 0.37 -0.1 1,250,258 - Shewana3_1064 0.38 +0.4 1,250,348 + Shewana3_1064 0.48 -0.5 1,250,356 - Shewana3_1064 0.49 -1.3 1,250,356 - Shewana3_1064 0.49 +0.6 1,250,356 - Shewana3_1064 0.49 +0.7 1,250,358 + Shewana3_1064 0.49 -2.2 1,250,358 + Shewana3_1064 0.49 -0.6 1,250,358 + Shewana3_1064 0.49 +0.5 1,250,358 + Shewana3_1064 0.49 -1.4 1,250,366 - Shewana3_1064 0.50 -1.8 1,250,366 - Shewana3_1064 0.50 +0.4 1,250,833 + +1.0 1,250,959 + Shewana3_1065 0.15 -1.4 1,250,972 - Shewana3_1065 0.16 +1.1 1,250,976 - Shewana3_1065 0.17 +0.2 1,250,978 + Shewana3_1065 0.17 -0.2 1,251,045 - Shewana3_1065 0.23 +0.4 1,251,045 - Shewana3_1065 0.23 +0.0 1,251,045 - Shewana3_1065 0.23 +0.6 1,251,129 - Shewana3_1065 0.32 +0.7 1,251,202 + Shewana3_1065 0.39 +0.6 1,251,210 - Shewana3_1065 0.40 +0.2 1,251,284 + Shewana3_1065 0.47 +3.4 1,251,389 + Shewana3_1065 0.58 -2.7 1,251,397 - Shewana3_1065 0.59 +0.3 1,251,458 + Shewana3_1065 0.65 -0.7
Or see this region's nucleotide sequence