Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1064

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1063 and Shewana3_1064 are separated by 34 nucleotidesShewana3_1064 and Shewana3_1065 overlap by 14 nucleotides Shewana3_1063: Shewana3_1063 - hypothetical protein (RefSeq), at 1,249,155 to 1,249,871 _1063 Shewana3_1064: Shewana3_1064 - peptidase U32 (RefSeq), at 1,249,906 to 1,250,823 _1064 Shewana3_1065: Shewana3_1065 - peptidase U32 (RefSeq), at 1,250,810 to 1,251,811 _1065 Position (kb) 1249 1250 1251Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1249.105 kb on - strandat 1249.122 kb on + strandat 1249.251 kb on - strand, within Shewana3_1063at 1249.580 kb on + strand, within Shewana3_1063at 1249.600 kb on - strand, within Shewana3_1063at 1249.703 kb on + strand, within Shewana3_1063at 1249.703 kb on + strand, within Shewana3_1063at 1249.880 kb on - strandat 1250.032 kb on + strand, within Shewana3_1064at 1250.250 kb on + strand, within Shewana3_1064at 1250.258 kb on - strand, within Shewana3_1064at 1250.348 kb on + strand, within Shewana3_1064at 1250.356 kb on - strand, within Shewana3_1064at 1250.356 kb on - strand, within Shewana3_1064at 1250.356 kb on - strand, within Shewana3_1064at 1250.358 kb on + strand, within Shewana3_1064at 1250.358 kb on + strand, within Shewana3_1064at 1250.358 kb on + strand, within Shewana3_1064at 1250.358 kb on + strand, within Shewana3_1064at 1250.366 kb on - strand, within Shewana3_1064at 1250.366 kb on - strand, within Shewana3_1064at 1250.833 kb on + strandat 1250.959 kb on + strand, within Shewana3_1065at 1250.972 kb on - strand, within Shewana3_1065at 1250.976 kb on - strand, within Shewana3_1065at 1250.978 kb on + strand, within Shewana3_1065at 1251.045 kb on - strand, within Shewana3_1065at 1251.045 kb on - strand, within Shewana3_1065at 1251.045 kb on - strand, within Shewana3_1065at 1251.129 kb on - strand, within Shewana3_1065at 1251.202 kb on + strand, within Shewana3_1065at 1251.210 kb on - strand, within Shewana3_1065at 1251.284 kb on + strand, within Shewana3_1065at 1251.389 kb on + strand, within Shewana3_1065at 1251.397 kb on - strand, within Shewana3_1065at 1251.458 kb on + strand, within Shewana3_1065

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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1,249,105 - -0.4
1,249,122 + +0.1
1,249,251 - Shewana3_1063 0.13 +1.1
1,249,580 + Shewana3_1063 0.59 -3.2
1,249,600 - Shewana3_1063 0.62 +0.2
1,249,703 + Shewana3_1063 0.76 +0.6
1,249,703 + Shewana3_1063 0.76 +0.4
1,249,880 - +0.4
1,250,032 + Shewana3_1064 0.14 -0.2
1,250,250 + Shewana3_1064 0.37 -0.1
1,250,258 - Shewana3_1064 0.38 +0.4
1,250,348 + Shewana3_1064 0.48 -0.5
1,250,356 - Shewana3_1064 0.49 -1.3
1,250,356 - Shewana3_1064 0.49 +0.6
1,250,356 - Shewana3_1064 0.49 +0.7
1,250,358 + Shewana3_1064 0.49 -2.2
1,250,358 + Shewana3_1064 0.49 -0.6
1,250,358 + Shewana3_1064 0.49 +0.5
1,250,358 + Shewana3_1064 0.49 -1.4
1,250,366 - Shewana3_1064 0.50 -1.8
1,250,366 - Shewana3_1064 0.50 +0.4
1,250,833 + +1.0
1,250,959 + Shewana3_1065 0.15 -1.4
1,250,972 - Shewana3_1065 0.16 +1.1
1,250,976 - Shewana3_1065 0.17 +0.2
1,250,978 + Shewana3_1065 0.17 -0.2
1,251,045 - Shewana3_1065 0.23 +0.4
1,251,045 - Shewana3_1065 0.23 +0.0
1,251,045 - Shewana3_1065 0.23 +0.6
1,251,129 - Shewana3_1065 0.32 +0.7
1,251,202 + Shewana3_1065 0.39 +0.6
1,251,210 - Shewana3_1065 0.40 +0.2
1,251,284 + Shewana3_1065 0.47 +3.4
1,251,389 + Shewana3_1065 0.58 -2.7
1,251,397 - Shewana3_1065 0.59 +0.3
1,251,458 + Shewana3_1065 0.65 -0.7

Or see this region's nucleotide sequence