Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argD and Shewana3_0611 are separated by 127 nucleotides Shewana3_0611 and astD are separated by 9 nucleotides
Shewana3_0610: argD - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq), at 714,876 to 716,093
argD
Shewana3_0611: Shewana3_0611 - Arginine N-succinyltransferase (EC 2.3.1.109) <small>(from data)</small>, at 716,221 to 717,240
_0611
Shewana3_0612: astD - succinylglutamic semialdehyde dehydrogenase (RefSeq), at 717,250 to 718,713
astD
Position (kb) 716
717
718 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 715.563 kb on + strand, within argD at 715.571 kb on - strand, within argD at 715.663 kb on + strand, within argD at 715.791 kb on + strand, within argD at 715.791 kb on - strand, within argD at 715.799 kb on - strand, within argD at 715.799 kb on - strand, within argD at 715.833 kb on + strand, within argD at 715.895 kb on + strand, within argD at 715.927 kb on - strand, within argD at 716.026 kb on - strand at 716.065 kb on + strand at 716.294 kb on + strand at 716.549 kb on + strand, within Shewana3_0611 at 716.549 kb on + strand, within Shewana3_0611 at 716.549 kb on + strand, within Shewana3_0611 at 716.557 kb on - strand, within Shewana3_0611 at 716.882 kb on - strand, within Shewana3_0611 at 716.905 kb on + strand, within Shewana3_0611 at 716.926 kb on + strand, within Shewana3_0611 at 716.959 kb on - strand, within Shewana3_0611 at 716.960 kb on + strand, within Shewana3_0611 at 717.173 kb on - strand at 717.634 kb on + strand, within astD at 717.642 kb on - strand, within astD at 717.669 kb on + strand, within astD at 717.676 kb on - strand, within astD at 717.838 kb on + strand, within astD at 717.838 kb on + strand, within astD at 717.971 kb on - strand, within astD at 718.041 kb on - strand, within astD at 718.074 kb on + strand, within astD at 718.074 kb on + strand, within astD at 718.095 kb on + strand, within astD at 718.143 kb on + strand, within astD at 718.169 kb on - strand, within astD at 718.169 kb on - strand, within astD
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 715,563 + argD Shewana3_0610 0.56 -3.2 715,571 - argD Shewana3_0610 0.57 -4.7 715,663 + argD Shewana3_0610 0.65 -3.3 715,791 + argD Shewana3_0610 0.75 -4.3 715,791 - argD Shewana3_0610 0.75 -2.8 715,799 - argD Shewana3_0610 0.76 -5.4 715,799 - argD Shewana3_0610 0.76 -2.4 715,833 + argD Shewana3_0610 0.79 -3.1 715,895 + argD Shewana3_0610 0.84 -4.0 715,927 - argD Shewana3_0610 0.86 -3.1 716,026 - -3.1 716,065 + +0.3 716,294 + -1.3 716,549 + Shewana3_0611 0.32 -0.9 716,549 + Shewana3_0611 0.32 -0.5 716,549 + Shewana3_0611 0.32 -1.4 716,557 - Shewana3_0611 0.33 -0.8 716,882 - Shewana3_0611 0.65 +0.7 716,905 + Shewana3_0611 0.67 -1.5 716,926 + Shewana3_0611 0.69 -0.3 716,959 - Shewana3_0611 0.72 -0.3 716,960 + Shewana3_0611 0.72 -1.7 717,173 - -0.0 717,634 + astD Shewana3_0612 0.26 +0.1 717,642 - astD Shewana3_0612 0.27 -3.3 717,669 + astD Shewana3_0612 0.29 -2.0 717,676 - astD Shewana3_0612 0.29 -0.5 717,838 + astD Shewana3_0612 0.40 -0.2 717,838 + astD Shewana3_0612 0.40 +0.5 717,971 - astD Shewana3_0612 0.49 -0.5 718,041 - astD Shewana3_0612 0.54 -0.4 718,074 + astD Shewana3_0612 0.56 -0.2 718,074 + astD Shewana3_0612 0.56 +0.7 718,095 + astD Shewana3_0612 0.58 +0.9 718,143 + astD Shewana3_0612 0.61 +0.6 718,169 - astD Shewana3_0612 0.63 -1.3 718,169 - astD Shewana3_0612 0.63 +2.0
Or see this region's nucleotide sequence