Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0251 and Shewana3_0252 are separated by 58 nucleotides Shewana3_0252 and Shewana3_0253 are separated by 14 nucleotides
Shewana3_0251: Shewana3_0251 - Fis family GAF modulated sigma54 specific transcriptional regulator (RefSeq), at 282,029 to 283,915
_0251
Shewana3_0252: Shewana3_0252 - ATPase domain-containing protein (RefSeq), at 283,974 to 285,323
_0252
Shewana3_0253: Shewana3_0253 - two component transcriptional regulator (RefSeq), at 285,338 to 286,024
_0253
Position (kb) 283
284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 283.084 kb on + strand, within Shewana3_0251 at 283.084 kb on + strand, within Shewana3_0251 at 283.092 kb on - strand, within Shewana3_0251 at 283.092 kb on - strand, within Shewana3_0251 at 283.092 kb on - strand, within Shewana3_0251 at 283.107 kb on - strand, within Shewana3_0251 at 283.266 kb on + strand, within Shewana3_0251 at 283.388 kb on + strand, within Shewana3_0251 at 283.532 kb on - strand, within Shewana3_0251 at 283.775 kb on - strand at 284.267 kb on - strand, within Shewana3_0252 at 284.813 kb on - strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.835 kb on - strand, within Shewana3_0252 at 284.839 kb on - strand, within Shewana3_0252 at 284.839 kb on - strand, within Shewana3_0252 at 284.883 kb on - strand, within Shewana3_0252 at 285.008 kb on + strand, within Shewana3_0252 at 285.008 kb on + strand, within Shewana3_0252 at 285.016 kb on - strand, within Shewana3_0252 at 285.043 kb on + strand, within Shewana3_0252 at 285.051 kb on - strand, within Shewana3_0252 at 285.498 kb on - strand, within Shewana3_0253 at 285.794 kb on + strand, within Shewana3_0253 at 285.863 kb on + strand, within Shewana3_0253 at 285.907 kb on + strand, within Shewana3_0253 at 285.907 kb on + strand, within Shewana3_0253 at 285.907 kb on + strand, within Shewana3_0253 at 285.915 kb on - strand, within Shewana3_0253 at 285.915 kb on - strand, within Shewana3_0253 at 285.915 kb on - strand, within Shewana3_0253 at 285.915 kb on - strand, within Shewana3_0253 at 285.927 kb on + strand, within Shewana3_0253 at 285.943 kb on + strand, within Shewana3_0253 at 286.049 kb on + strand at 286.058 kb on + strand at 286.125 kb on + strand at 286.195 kb on - strand at 286.226 kb on - strand at 286.282 kb on - strand at 286.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 283,084 + Shewana3_0251 0.56 -1.5 283,084 + Shewana3_0251 0.56 -1.1 283,092 - Shewana3_0251 0.56 +0.4 283,092 - Shewana3_0251 0.56 -2.9 283,092 - Shewana3_0251 0.56 +0.1 283,107 - Shewana3_0251 0.57 -1.3 283,266 + Shewana3_0251 0.66 +0.2 283,388 + Shewana3_0251 0.72 +0.3 283,532 - Shewana3_0251 0.80 -1.4 283,775 - +0.8 284,267 - Shewana3_0252 0.22 +0.2 284,813 - Shewana3_0252 0.62 +0.0 284,831 + Shewana3_0252 0.63 -1.4 284,831 + Shewana3_0252 0.63 +0.6 284,831 + Shewana3_0252 0.63 -1.5 284,835 - Shewana3_0252 0.64 -0.1 284,839 - Shewana3_0252 0.64 -1.5 284,839 - Shewana3_0252 0.64 -0.5 284,883 - Shewana3_0252 0.67 +0.6 285,008 + Shewana3_0252 0.77 -1.8 285,008 + Shewana3_0252 0.77 -0.8 285,016 - Shewana3_0252 0.77 -0.8 285,043 + Shewana3_0252 0.79 -0.7 285,051 - Shewana3_0252 0.80 +0.7 285,498 - Shewana3_0253 0.23 +0.7 285,794 + Shewana3_0253 0.66 -0.9 285,863 + Shewana3_0253 0.76 +0.4 285,907 + Shewana3_0253 0.83 -1.3 285,907 + Shewana3_0253 0.83 +1.0 285,907 + Shewana3_0253 0.83 +0.1 285,915 - Shewana3_0253 0.84 +0.3 285,915 - Shewana3_0253 0.84 +0.6 285,915 - Shewana3_0253 0.84 -1.0 285,915 - Shewana3_0253 0.84 -0.2 285,927 + Shewana3_0253 0.86 -1.6 285,943 + Shewana3_0253 0.88 +1.0 286,049 + -2.3 286,058 + -1.5 286,125 + +0.1 286,195 - -1.5 286,226 - -0.2 286,282 - -0.7 286,286 + +0.7
Or see this region's nucleotide sequence