Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0050

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0049 and Shewana3_0050 are separated by 48 nucleotidesShewana3_0050 and Shewana3_0051 are separated by 10 nucleotides Shewana3_0049: Shewana3_0049 - C-terminal processing peptidase-3 (RefSeq), at 57,828 to 59,033 _0049 Shewana3_0050: Shewana3_0050 - peptidase M23B (RefSeq), at 59,082 to 60,215 _0050 Shewana3_0051: Shewana3_0051 - phosphoglyceromutase (RefSeq), at 60,226 to 61,770 _0051 Position (kb) 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1at 58.089 kb on + strand, within Shewana3_0049at 58.255 kb on + strand, within Shewana3_0049at 58.376 kb on + strand, within Shewana3_0049at 58.376 kb on + strand, within Shewana3_0049at 58.384 kb on - strand, within Shewana3_0049at 58.384 kb on - strand, within Shewana3_0049at 58.384 kb on - strand, within Shewana3_0049at 58.384 kb on - strand, within Shewana3_0049at 58.540 kb on - strand, within Shewana3_0049at 58.544 kb on + strand, within Shewana3_0049at 58.704 kb on + strand, within Shewana3_0049at 58.979 kb on + strandat 58.979 kb on + strandat 59.136 kb on + strandat 59.136 kb on + strandat 59.301 kb on - strand, within Shewana3_0050at 59.302 kb on - strand, within Shewana3_0050at 60.109 kb on + strandat 60.211 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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58,089 + Shewana3_0049 0.22 +0.3
58,255 + Shewana3_0049 0.35 +0.4
58,376 + Shewana3_0049 0.45 -0.4
58,376 + Shewana3_0049 0.45 +0.1
58,384 - Shewana3_0049 0.46 -1.1
58,384 - Shewana3_0049 0.46 -0.9
58,384 - Shewana3_0049 0.46 +0.3
58,384 - Shewana3_0049 0.46 -0.9
58,540 - Shewana3_0049 0.59 -1.3
58,544 + Shewana3_0049 0.59 -0.3
58,704 + Shewana3_0049 0.73 -0.8
58,979 + -0.0
58,979 + -0.5
59,136 + -1.7
59,136 + +1.5
59,301 - Shewana3_0050 0.19 +0.0
59,302 - Shewana3_0050 0.19 +0.1
60,109 + -3.4
60,211 - +1.4

Or see this region's nucleotide sequence