Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0028

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0027 and Shewana3_0028 are separated by 1 nucleotidesShewana3_0028 and Shewana3_0029 are separated by 54 nucleotidesShewana3_0029 and Shewana3_0030 are separated by 198 nucleotides Shewana3_0027: Shewana3_0027 - TrkH family potassium uptake protein (RefSeq), at 34,058 to 35,515 _0027 Shewana3_0028: Shewana3_0028 - protoporphyrinogen oxidase (RefSeq), at 35,517 to 36,041 _0028 Shewana3_0029: Shewana3_0029 - ArsR family transcriptional regulator (RefSeq), at 36,096 to 36,404 _0029 Shewana3_0030: Shewana3_0030 - protoporphyrinogen oxidase (RefSeq), at 36,603 to 37,157 _0030 Position (kb) 35 36 37Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 34.631 kb on - strand, within Shewana3_0027at 35.056 kb on + strand, within Shewana3_0027at 35.121 kb on + strand, within Shewana3_0027at 35.121 kb on + strand, within Shewana3_0027at 35.129 kb on - strand, within Shewana3_0027at 35.136 kb on + strand, within Shewana3_0027at 35.179 kb on - strand, within Shewana3_0027at 35.196 kb on - strand, within Shewana3_0027at 35.196 kb on - strand, within Shewana3_0027at 35.196 kb on - strand, within Shewana3_0027at 35.270 kb on + strand, within Shewana3_0027at 35.276 kb on + strand, within Shewana3_0027at 35.276 kb on + strand, within Shewana3_0027at 35.278 kb on - strand, within Shewana3_0027at 35.293 kb on + strand, within Shewana3_0027at 35.319 kb on + strand, within Shewana3_0027at 35.366 kb on - strand, within Shewana3_0027at 35.373 kb on + strandat 35.621 kb on - strand, within Shewana3_0028at 35.631 kb on - strand, within Shewana3_0028at 35.640 kb on + strand, within Shewana3_0028at 35.640 kb on + strand, within Shewana3_0028at 35.640 kb on + strand, within Shewana3_0028at 35.641 kb on + strand, within Shewana3_0028at 35.648 kb on - strand, within Shewana3_0028at 35.649 kb on - strand, within Shewana3_0028at 35.674 kb on - strand, within Shewana3_0028at 35.742 kb on + strand, within Shewana3_0028at 35.742 kb on + strand, within Shewana3_0028at 35.750 kb on - strand, within Shewana3_0028at 35.853 kb on - strand, within Shewana3_0028at 35.925 kb on + strand, within Shewana3_0028at 35.975 kb on - strand, within Shewana3_0028at 36.060 kb on - strandat 36.060 kb on - strandat 36.078 kb on - strandat 36.092 kb on - strandat 36.115 kb on - strandat 36.159 kb on - strand, within Shewana3_0029at 36.159 kb on - strand, within Shewana3_0029at 36.159 kb on - strand, within Shewana3_0029at 36.170 kb on - strand, within Shewana3_0029at 36.170 kb on - strand, within Shewana3_0029at 36.593 kb on + strandat 36.691 kb on + strand, within Shewana3_0030at 36.696 kb on + strand, within Shewana3_0030at 36.775 kb on + strand, within Shewana3_0030at 36.884 kb on + strand, within Shewana3_0030at 37.007 kb on - strand, within Shewana3_0030at 37.008 kb on + strand, within Shewana3_0030

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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34,631 - Shewana3_0027 0.39 +2.4
35,056 + Shewana3_0027 0.68 +0.7
35,121 + Shewana3_0027 0.73 +3.1
35,121 + Shewana3_0027 0.73 -1.3
35,129 - Shewana3_0027 0.73 +2.0
35,136 + Shewana3_0027 0.74 +2.0
35,179 - Shewana3_0027 0.77 +0.7
35,196 - Shewana3_0027 0.78 +3.0
35,196 - Shewana3_0027 0.78 +0.9
35,196 - Shewana3_0027 0.78 +2.7
35,270 + Shewana3_0027 0.83 +2.7
35,276 + Shewana3_0027 0.84 +2.5
35,276 + Shewana3_0027 0.84 -0.5
35,278 - Shewana3_0027 0.84 +1.0
35,293 + Shewana3_0027 0.85 +2.6
35,319 + Shewana3_0027 0.86 +1.2
35,366 - Shewana3_0027 0.90 +2.6
35,373 + +0.3
35,621 - Shewana3_0028 0.20 -0.3
35,631 - Shewana3_0028 0.22 -0.6
35,640 + Shewana3_0028 0.23 -0.7
35,640 + Shewana3_0028 0.23 -0.4
35,640 + Shewana3_0028 0.23 -3.9
35,641 + Shewana3_0028 0.24 -0.3
35,648 - Shewana3_0028 0.25 -0.7
35,649 - Shewana3_0028 0.25 +0.1
35,674 - Shewana3_0028 0.30 +0.5
35,742 + Shewana3_0028 0.43 +0.0
35,742 + Shewana3_0028 0.43 +0.5
35,750 - Shewana3_0028 0.44 +0.0
35,853 - Shewana3_0028 0.64 -2.9
35,925 + Shewana3_0028 0.78 -3.4
35,975 - Shewana3_0028 0.87 -1.8
36,060 - -3.1
36,060 - -0.8
36,078 - -1.2
36,092 - +0.7
36,115 - -1.0
36,159 - Shewana3_0029 0.20 -0.3
36,159 - Shewana3_0029 0.20 +0.3
36,159 - Shewana3_0029 0.20 +1.2
36,170 - Shewana3_0029 0.24 -0.4
36,170 - Shewana3_0029 0.24 -0.9
36,593 + +0.2
36,691 + Shewana3_0030 0.16 -0.8
36,696 + Shewana3_0030 0.17 +1.4
36,775 + Shewana3_0030 0.31 +0.1
36,884 + Shewana3_0030 0.51 +1.3
37,007 - Shewana3_0030 0.73 -1.6
37,008 + Shewana3_0030 0.73 -2.7

Or see this region's nucleotide sequence