Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4350

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4349 and Shewana3_4350 are separated by 555 nucleotidesShewana3_4350 and Shewana3_4351 overlap by 4 nucleotides Shewana3_4349: Shewana3_4349 - umuC protein (RefSeq), at 233,152 to 233,817 _4349 Shewana3_4350: Shewana3_4350 - hypothetical protein (RefSeq), at 234,373 to 235,905 _4350 Shewana3_4351: Shewana3_4351 - patatin (RefSeq), at 235,902 to 236,840 _4351 Position (kb) 234 235 236Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 233.391 kb on + strand, within Shewana3_4349at 233.563 kb on + strand, within Shewana3_4349at 233.571 kb on - strand, within Shewana3_4349at 233.571 kb on - strand, within Shewana3_4349at 233.712 kb on + strand, within Shewana3_4349at 233.712 kb on + strand, within Shewana3_4349at 233.712 kb on + strand, within Shewana3_4349at 233.712 kb on + strand, within Shewana3_4349at 233.712 kb on + strand, within Shewana3_4349at 233.712 kb on + strand, within Shewana3_4349at 233.720 kb on - strand, within Shewana3_4349at 233.763 kb on + strandat 233.776 kb on - strandat 233.783 kb on - strandat 233.858 kb on - strandat 233.901 kb on - strandat 234.059 kb on + strandat 234.135 kb on + strandat 234.143 kb on - strandat 234.143 kb on - strandat 234.473 kb on + strandat 234.481 kb on - strandat 234.539 kb on + strand, within Shewana3_4350at 234.547 kb on - strand, within Shewana3_4350at 234.549 kb on + strand, within Shewana3_4350at 234.557 kb on - strand, within Shewana3_4350at 234.565 kb on + strand, within Shewana3_4350at 234.565 kb on + strand, within Shewana3_4350at 234.565 kb on + strand, within Shewana3_4350at 234.565 kb on + strand, within Shewana3_4350at 234.573 kb on - strand, within Shewana3_4350at 234.573 kb on - strand, within Shewana3_4350at 234.573 kb on - strand, within Shewana3_4350at 234.583 kb on - strand, within Shewana3_4350at 234.583 kb on - strand, within Shewana3_4350at 234.642 kb on + strand, within Shewana3_4350at 234.652 kb on + strand, within Shewana3_4350at 234.652 kb on + strand, within Shewana3_4350at 234.661 kb on - strand, within Shewana3_4350at 234.671 kb on - strand, within Shewana3_4350at 234.761 kb on - strand, within Shewana3_4350at 234.771 kb on + strand, within Shewana3_4350at 234.771 kb on + strand, within Shewana3_4350at 234.771 kb on + strand, within Shewana3_4350at 234.771 kb on + strand, within Shewana3_4350at 234.779 kb on - strand, within Shewana3_4350at 234.779 kb on - strand, within Shewana3_4350at 234.779 kb on - strand, within Shewana3_4350at 234.779 kb on - strand, within Shewana3_4350at 234.972 kb on + strand, within Shewana3_4350at 234.973 kb on - strand, within Shewana3_4350at 234.979 kb on - strand, within Shewana3_4350at 234.980 kb on - strand, within Shewana3_4350at 235.002 kb on + strand, within Shewana3_4350at 235.069 kb on + strand, within Shewana3_4350at 235.082 kb on + strand, within Shewana3_4350at 235.083 kb on - strand, within Shewana3_4350at 235.105 kb on + strand, within Shewana3_4350at 235.209 kb on - strand, within Shewana3_4350at 235.225 kb on - strand, within Shewana3_4350at 235.243 kb on - strand, within Shewana3_4350at 235.250 kb on + strand, within Shewana3_4350at 235.258 kb on - strand, within Shewana3_4350at 235.341 kb on + strand, within Shewana3_4350at 235.489 kb on + strand, within Shewana3_4350at 235.489 kb on - strand, within Shewana3_4350at 235.497 kb on - strand, within Shewana3_4350at 235.499 kb on - strand, within Shewana3_4350at 235.501 kb on + strand, within Shewana3_4350at 235.514 kb on + strand, within Shewana3_4350at 235.536 kb on - strand, within Shewana3_4350at 235.546 kb on - strand, within Shewana3_4350at 235.627 kb on + strand, within Shewana3_4350at 235.627 kb on + strand, within Shewana3_4350at 235.627 kb on + strand, within Shewana3_4350at 235.631 kb on + strand, within Shewana3_4350at 235.635 kb on - strand, within Shewana3_4350at 235.635 kb on - strand, within Shewana3_4350at 235.635 kb on - strand, within Shewana3_4350at 235.635 kb on - strand, within Shewana3_4350at 235.663 kb on + strand, within Shewana3_4350at 235.663 kb on + strand, within Shewana3_4350at 235.743 kb on + strand, within Shewana3_4350at 235.743 kb on - strand, within Shewana3_4350at 235.744 kb on + strand, within Shewana3_4350at 235.752 kb on - strandat 235.752 kb on - strandat 235.752 kb on - strandat 236.133 kb on + strand, within Shewana3_4351at 236.134 kb on + strand, within Shewana3_4351at 236.161 kb on + strand, within Shewana3_4351at 236.176 kb on - strand, within Shewana3_4351at 236.176 kb on - strand, within Shewana3_4351at 236.198 kb on - strand, within Shewana3_4351at 236.268 kb on + strand, within Shewana3_4351at 236.382 kb on - strand, within Shewana3_4351at 236.469 kb on + strand, within Shewana3_4351at 236.495 kb on + strand, within Shewana3_4351at 236.554 kb on + strand, within Shewana3_4351at 236.788 kb on + strandat 236.788 kb on + strandat 236.796 kb on - strandat 236.796 kb on - strandat 236.796 kb on - strandat 236.796 kb on - strandat 236.796 kb on - strandat 236.797 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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233,391 + Shewana3_4349 0.36 +0.6
233,563 + Shewana3_4349 0.62 +0.4
233,571 - Shewana3_4349 0.63 +0.3
233,571 - Shewana3_4349 0.63 -1.9
233,712 + Shewana3_4349 0.84 -1.0
233,712 + Shewana3_4349 0.84 -0.3
233,712 + Shewana3_4349 0.84 +0.4
233,712 + Shewana3_4349 0.84 +1.2
233,712 + Shewana3_4349 0.84 -0.6
233,712 + Shewana3_4349 0.84 +0.6
233,720 - Shewana3_4349 0.85 -1.3
233,763 + -0.5
233,776 - +2.4
233,783 - +2.3
233,858 - -0.4
233,901 - -1.3
234,059 + -1.1
234,135 + -0.4
234,143 - +0.5
234,143 - -1.2
234,473 + -1.0
234,481 - +0.8
234,539 + Shewana3_4350 0.11 +1.5
234,547 - Shewana3_4350 0.11 +2.6
234,549 + Shewana3_4350 0.11 -0.0
234,557 - Shewana3_4350 0.12 -0.1
234,565 + Shewana3_4350 0.13 +1.1
234,565 + Shewana3_4350 0.13 -0.7
234,565 + Shewana3_4350 0.13 +0.4
234,565 + Shewana3_4350 0.13 +0.5
234,573 - Shewana3_4350 0.13 +0.6
234,573 - Shewana3_4350 0.13 -0.6
234,573 - Shewana3_4350 0.13 -3.8
234,583 - Shewana3_4350 0.14 -0.5
234,583 - Shewana3_4350 0.14 -1.9
234,642 + Shewana3_4350 0.18 -0.1
234,652 + Shewana3_4350 0.18 -0.3
234,652 + Shewana3_4350 0.18 -0.2
234,661 - Shewana3_4350 0.19 +0.2
234,671 - Shewana3_4350 0.19 +0.3
234,761 - Shewana3_4350 0.25 -0.1
234,771 + Shewana3_4350 0.26 +0.5
234,771 + Shewana3_4350 0.26 -0.8
234,771 + Shewana3_4350 0.26 +0.2
234,771 + Shewana3_4350 0.26 +0.5
234,779 - Shewana3_4350 0.26 -0.9
234,779 - Shewana3_4350 0.26 -0.7
234,779 - Shewana3_4350 0.26 +0.6
234,779 - Shewana3_4350 0.26 +0.9
234,972 + Shewana3_4350 0.39 +3.3
234,973 - Shewana3_4350 0.39 -2.0
234,979 - Shewana3_4350 0.40 +0.0
234,980 - Shewana3_4350 0.40 -0.4
235,002 + Shewana3_4350 0.41 -1.1
235,069 + Shewana3_4350 0.45 +0.5
235,082 + Shewana3_4350 0.46 +0.7
235,083 - Shewana3_4350 0.46 -1.0
235,105 + Shewana3_4350 0.48 -1.4
235,209 - Shewana3_4350 0.55 +0.7
235,225 - Shewana3_4350 0.56 -0.1
235,243 - Shewana3_4350 0.57 +0.1
235,250 + Shewana3_4350 0.57 -0.0
235,258 - Shewana3_4350 0.58 +0.2
235,341 + Shewana3_4350 0.63 -2.2
235,489 + Shewana3_4350 0.73 +0.8
235,489 - Shewana3_4350 0.73 +4.1
235,497 - Shewana3_4350 0.73 -0.9
235,499 - Shewana3_4350 0.73 +0.5
235,501 + Shewana3_4350 0.74 -1.2
235,514 + Shewana3_4350 0.74 -0.3
235,536 - Shewana3_4350 0.76 -0.7
235,546 - Shewana3_4350 0.77 +1.8
235,627 + Shewana3_4350 0.82 +0.3
235,627 + Shewana3_4350 0.82 -0.4
235,627 + Shewana3_4350 0.82 +0.4
235,631 + Shewana3_4350 0.82 +0.8
235,635 - Shewana3_4350 0.82 -2.4
235,635 - Shewana3_4350 0.82 +0.4
235,635 - Shewana3_4350 0.82 +1.2
235,635 - Shewana3_4350 0.82 -1.2
235,663 + Shewana3_4350 0.84 -1.0
235,663 + Shewana3_4350 0.84 -3.2
235,743 + Shewana3_4350 0.89 +0.7
235,743 - Shewana3_4350 0.89 -0.9
235,744 + Shewana3_4350 0.89 +0.8
235,752 - +0.6
235,752 - -0.3
235,752 - +3.4
236,133 + Shewana3_4351 0.25 +0.3
236,134 + Shewana3_4351 0.25 -0.0
236,161 + Shewana3_4351 0.28 -0.7
236,176 - Shewana3_4351 0.29 -3.3
236,176 - Shewana3_4351 0.29 +3.8
236,198 - Shewana3_4351 0.32 -0.4
236,268 + Shewana3_4351 0.39 -1.0
236,382 - Shewana3_4351 0.51 +0.7
236,469 + Shewana3_4351 0.60 -1.2
236,495 + Shewana3_4351 0.63 +1.7
236,554 + Shewana3_4351 0.69 -1.1
236,788 + +0.2
236,788 + +0.6
236,796 - +0.6
236,796 - -0.3
236,796 - +0.8
236,796 - -0.3
236,796 - -1.1
236,797 - -0.3

Or see this region's nucleotide sequence