Strain Fitness in Shewanella loihica PV-4 around Shew_3465
Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 1 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,147,810 | - | Shew_3464 | 0.38 | -0.1 | |
4,147,939 | - | Shew_3464 | 0.49 | -3.1 | |
4,147,939 | - | Shew_3464 | 0.49 | +0.2 | |
4,147,939 | - | Shew_3464 | 0.49 | +0.6 | |
4,148,086 | + | Shew_3464 | 0.62 | -0.1 | |
4,148,177 | - | Shew_3464 | 0.70 | +0.5 | |
4,148,385 | + | Shew_3464 | 0.89 | -0.4 | |
4,148,463 | + | +1.3 | |||
4,148,496 | + | -1.1 | |||
4,148,496 | + | +1.2 | |||
4,148,504 | - | +0.9 | |||
4,148,707 | + | -0.2 | |||
4,148,722 | + | Shew_3465 | 0.14 | +0.0 | |
4,148,769 | + | Shew_3465 | 0.29 | +1.5 | |
4,149,117 | + | +0.9 | |||
4,149,117 | + | +0.4 | |||
4,149,117 | + | +0.5 | |||
4,149,555 | - | Shew_3466 | 0.35 | +0.3 | |
4,149,764 | + | Shew_3466 | 0.49 | +0.2 | |
4,149,947 | + | Shew_3466 | 0.61 | -0.1 |
Or see this region's nucleotide sequence