Strain Fitness in Shewanella loihica PV-4 around Shew_2150

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2149 and Shew_2150 are separated by 136 nucleotidesShew_2150 and Shew_2151 are separated by 116 nucleotidesShew_2151 and Shew_2152 are separated by 354 nucleotides Shew_2149: Shew_2149 - ABC transporter (RefSeq), at 2,495,069 to 2,495,929 _2149 Shew_2150: Shew_2150 - integral membrane protein TerC (RefSeq), at 2,496,066 to 2,496,293 _2150 Shew_2151: Shew_2151 - hypothetical protein (RefSeq), at 2,496,410 to 2,496,787 _2151 Shew_2152: Shew_2152 - hypothetical protein (RefSeq), at 2,497,142 to 2,497,486 _2152 Position (kb) 2496 2497Strain fitness (log2 ratio) -2 -1 0 1 2at 2495.186 kb on - strand, within Shew_2149at 2495.668 kb on + strand, within Shew_2149at 2495.776 kb on - strand, within Shew_2149at 2495.881 kb on - strandat 2496.151 kb on + strand, within Shew_2150at 2496.197 kb on - strand, within Shew_2150at 2496.267 kb on - strand, within Shew_2150at 2496.440 kb on + strandat 2496.440 kb on + strandat 2496.495 kb on - strand, within Shew_2151

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,495,186 - Shew_2149 0.14 -2.4
2,495,668 + Shew_2149 0.70 +0.4
2,495,776 - Shew_2149 0.82 +1.5
2,495,881 - -1.2
2,496,151 + Shew_2150 0.37 +1.0
2,496,197 - Shew_2150 0.57 +0.6
2,496,267 - Shew_2150 0.88 +0.2
2,496,440 + +2.5
2,496,440 + -0.8
2,496,495 - Shew_2151 0.22 +0.1

Or see this region's nucleotide sequence