Strain Fitness in Shewanella loihica PV-4 around Shew_2150
Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Cisplatin 1 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 2,495,186 | - | Shew_2149 | 0.14 | -2.4 | |
| 2,495,668 | + | Shew_2149 | 0.70 | +0.4 | |
| 2,495,776 | - | Shew_2149 | 0.82 | +1.5 | |
| 2,495,881 | - | -1.2 | |||
| 2,496,151 | + | Shew_2150 | 0.37 | +1.0 | |
| 2,496,197 | - | Shew_2150 | 0.57 | +0.6 | |
| 2,496,267 | - | Shew_2150 | 0.88 | +0.2 | |
| 2,496,440 | + | +2.5 | |||
| 2,496,440 | + | -0.8 | |||
| 2,496,495 | - | Shew_2151 | 0.22 | +0.1 |
Or see this region's nucleotide sequence