Strain Fitness in Shewanella loihica PV-4 around Shew_2127
Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 1 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,464,774 | - | Shew_2126 | 0.16 | +0.3 | |
2,464,884 | + | Shew_2126 | 0.28 | -0.1 | |
2,464,985 | - | Shew_2126 | 0.39 | +0.2 | |
2,465,377 | + | Shew_2126 | 0.82 | +0.9 | |
2,465,390 | - | Shew_2126 | 0.84 | +0.4 | |
2,465,470 | - | +0.3 | |||
2,465,470 | - | +0.1 | |||
2,465,639 | + | -0.6 | |||
2,465,946 | + | Shew_2127 | 0.39 | -1.0 | |
2,466,326 | - | Shew_2127 | 0.77 | -0.4 | |
2,466,326 | - | Shew_2127 | 0.77 | +0.4 | |
2,466,326 | - | Shew_2127 | 0.77 | +0.3 | |
2,466,326 | - | Shew_2127 | 0.77 | +1.7 | |
2,466,387 | + | Shew_2127 | 0.83 | -0.4 | |
2,466,655 | - | +0.6 | |||
2,466,775 | - | Shew_2128 | 0.11 | -0.6 | |
2,466,879 | + | Shew_2128 | 0.16 | +0.2 | |
2,467,026 | + | Shew_2128 | 0.23 | +1.1 | |
2,467,458 | + | Shew_2128 | 0.44 | +0.9 |
Or see this region's nucleotide sequence