Strain Fitness in Shewanella loihica PV-4 around Shew_1967

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1966 and Shew_1967 are separated by 643 nucleotidesShew_1967 and Shew_1968 are separated by 274 nucleotides Shew_1966: Shew_1966 - DTW domain-containing protein (RefSeq), at 2,271,340 to 2,272,089 _1966 Shew_1967: Shew_1967 - amidohydrolase (RefSeq), at 2,272,733 to 2,273,950 _1967 Shew_1968: Shew_1968 - beta-lactamase (RefSeq), at 2,274,225 to 2,275,367 _1968 Position (kb) 2272 2273 2274Strain fitness (log2 ratio) -1 0 1at 2272.370 kb on - strandat 2272.850 kb on - strandat 2272.860 kb on - strand, within Shew_1967at 2272.889 kb on + strand, within Shew_1967at 2273.206 kb on + strand, within Shew_1967at 2273.216 kb on + strand, within Shew_1967at 2273.836 kb on - strandat 2273.854 kb on - strandat 2274.625 kb on + strand, within Shew_1968

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,272,370 - +0.4
2,272,850 - -1.4
2,272,860 - Shew_1967 0.10 +0.8
2,272,889 + Shew_1967 0.13 -0.4
2,273,206 + Shew_1967 0.39 -0.3
2,273,216 + Shew_1967 0.40 +0.4
2,273,836 - +0.8
2,273,854 - +1.6
2,274,625 + Shew_1968 0.35 +1.3

Or see this region's nucleotide sequence