Strain Fitness in Shewanella loihica PV-4 around Shew_1597

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1596 and Shew_1597 are separated by 343 nucleotidesShew_1597 and Shew_1598 are separated by 430 nucleotidesShew_1598 and rpmF are separated by 17 nucleotides Shew_1596: Shew_1596 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 1,828,988 to 1,830,361 _1596 Shew_1597: Shew_1597 - maf protein (RefSeq), at 1,830,705 to 1,831,301 _1597 Shew_1598: Shew_1598 - hypothetical protein (RefSeq), at 1,831,732 to 1,832,256 _1598 Shew_1599: rpmF - 50S ribosomal protein L32 (RefSeq), at 1,832,274 to 1,832,444 rpmF Position (kb) 1830 1831 1832Strain fitness (log2 ratio) -1 0 1at 1829.740 kb on - strand, within Shew_1596at 1829.777 kb on + strand, within Shew_1596at 1829.957 kb on - strand, within Shew_1596at 1830.446 kb on - strandat 1830.653 kb on + strandat 1830.977 kb on + strand, within Shew_1597at 1830.985 kb on - strand, within Shew_1597

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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1,829,740 - Shew_1596 0.55 +0.2
1,829,777 + Shew_1596 0.57 +0.2
1,829,957 - Shew_1596 0.71 +1.5
1,830,446 - -0.6
1,830,653 + +0.6
1,830,977 + Shew_1597 0.46 +1.0
1,830,985 - Shew_1597 0.47 -0.4

Or see this region's nucleotide sequence