Strain Fitness in Shewanella loihica PV-4 around Shew_1582

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1580 and Shew_1581 are separated by 6 nucleotidesShew_1581 and Shew_1582 are separated by 44 nucleotidesShew_1582 and yebU are separated by 351 nucleotides Shew_1580: Shew_1580 - DNA polymerase III, delta prime subunit (RefSeq), at 1,809,898 to 1,810,812 _1580 Shew_1581: Shew_1581 - type IV pilus assembly PilZ (RefSeq), at 1,810,819 to 1,811,145 _1581 Shew_1582: Shew_1582 - TatD family hydrolase (RefSeq), at 1,811,190 to 1,811,978 _1582 Shew_1583: yebU - rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq), at 1,812,330 to 1,813,790 yebU Position (kb) 1811 1812Strain fitness (log2 ratio) -3 -2 -1 0 1at 1811.310 kb on - strand, within Shew_1582at 1811.360 kb on - strand, within Shew_1582at 1811.945 kb on + strandat 1811.953 kb on - strandat 1812.714 kb on - strand, within yebU

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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1,811,310 - Shew_1582 0.15 -0.6
1,811,360 - Shew_1582 0.22 -2.9
1,811,945 + -0.1
1,811,953 - +0.4
1,812,714 - yebU Shew_1583 0.26 +0.8

Or see this region's nucleotide sequence