Strain Fitness in Shewanella loihica PV-4 around Shew_1351

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflgF and flgG are separated by 10 nucleotidesflgG and flgH are separated by 9 nucleotidesflgH and flgI are separated by 11 nucleotides Shew_1349: flgF - flagellar basal body rod protein FlgF (RefSeq), at 1,557,929 to 1,558,672 flgF Shew_1350: flgG - flagellar basal body rod protein FlgG (RefSeq), at 1,558,683 to 1,559,471 flgG Shew_1351: flgH - flagellar basal body L-ring protein (RefSeq), at 1,559,481 to 1,560,185 flgH Shew_1352: flgI - flagellar basal body P-ring protein (RefSeq), at 1,560,197 to 1,561,288 flgI Position (kb) 1559 1560 1561Strain fitness (log2 ratio) -3 -2 -1 0 1at 1558.774 kb on + strand, within flgGat 1559.289 kb on + strand, within flgGat 1559.413 kb on + strandat 1560.280 kb on + strandat 1560.534 kb on - strand, within flgIat 1560.599 kb on + strand, within flgIat 1560.656 kb on - strand, within flgIat 1560.656 kb on - strand, within flgIat 1561.077 kb on - strand, within flgIat 1561.077 kb on - strand, within flgI

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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1,558,774 + flgG Shew_1350 0.12 -1.9
1,559,289 + flgG Shew_1350 0.77 -0.6
1,559,413 + +0.1
1,560,280 + -1.4
1,560,534 - flgI Shew_1352 0.31 -0.8
1,560,599 + flgI Shew_1352 0.37 -0.8
1,560,656 - flgI Shew_1352 0.42 -3.6
1,560,656 - flgI Shew_1352 0.42 -0.1
1,561,077 - flgI Shew_1352 0.81 -2.2
1,561,077 - flgI Shew_1352 0.81 -1.4

Or see this region's nucleotide sequence