Strain Fitness in Shewanella loihica PV-4 around Shew_1079

Experiment: Cisplatin 1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 1 mg/ml
1,240,783	-		Shew_1078	0.68	+2.5
1,240,842	+		Shew_1078	0.77	+2.6
1,240,971	-				+2.7
1,241,040	-				+1.5
1,241,041	-				+2.8
1,241,086	+				-1.4
1,241,094	-				+0.1
1,241,099	-				+0.2
1,241,189	+				-2.0
1,241,197	-				+0.6
1,241,461	+				+0.3
1,241,496	+				-0.8
1,241,682	+				+0.5
1,241,690	-				+0.6
1,241,690	-				-0.4
1,241,753	-				-0.0
1,241,907	+				-0.2
1,242,012	+	thrA	Shew_1079	0.13	+0.2
1,242,527	+	thrA	Shew_1079	0.34	+0.6
1,242,706	-	thrA	Shew_1079	0.41	+1.0
1,242,991	+	thrA	Shew_1079	0.52	+1.0
1,243,125	+	thrA	Shew_1079	0.58	+0.5
1,243,338	+	thrA	Shew_1079	0.66	+0.3
1,243,338	+	thrA	Shew_1079	0.66	-0.0
1,243,346	-	thrA	Shew_1079	0.67	-1.9
1,243,727	+	thrA	Shew_1079	0.82	+0.3
1,243,735	-	thrA	Shew_1079	0.83	-0.3
1,243,735	-	thrA	Shew_1079	0.83	+0.8
1,244,135	+				+0.4
1,244,159	-				+0.1
1,244,415	+		Shew_1080	0.26	-1.3
1,244,689	-		Shew_1080	0.55	+1.9