Strain Fitness in Shewanella loihica PV-4 around Shew_0814

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0813 and Shew_0814 are separated by 44 nucleotidesShew_0814 and Shew_0815 are separated by 357 nucleotides Shew_0813: Shew_0813 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 935,718 to 938,231 _0813 Shew_0814: Shew_0814 - pseudouridine synthase (RefSeq), at 938,276 to 938,824 _0814 Shew_0815: Shew_0815 - Glucosamine-6-phosphate deaminase (EC 3.5.99.6) (from data), at 939,182 to 939,988 _0815 Position (kb) 938 939Strain fitness (log2 ratio) -3 -2 -1 0 1at 937.563 kb on - strand, within Shew_0813at 938.168 kb on + strandat 938.210 kb on - strandat 938.281 kb on - strandat 938.372 kb on + strand, within Shew_0814at 938.777 kb on - strandat 939.056 kb on + strandat 939.369 kb on + strand, within Shew_0815at 939.615 kb on + strand, within Shew_0815at 939.623 kb on - strand, within Shew_0815at 939.787 kb on + strand, within Shew_0815at 939.789 kb on - strand, within Shew_0815at 939.809 kb on + strand, within Shew_0815

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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937,563 - Shew_0813 0.73 +0.7
938,168 + +0.5
938,210 - +0.4
938,281 - -3.2
938,372 + Shew_0814 0.17 +0.0
938,777 - +0.3
939,056 + -0.1
939,369 + Shew_0815 0.23 +0.4
939,615 + Shew_0815 0.54 +0.4
939,623 - Shew_0815 0.55 -2.0
939,787 + Shew_0815 0.75 +0.6
939,789 - Shew_0815 0.75 +0.8
939,809 + Shew_0815 0.78 +0.2

Or see this region's nucleotide sequence