Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0480 and Shew_0481 are separated by 134 nucleotides Shew_0481 and Shew_0482 are separated by 289 nucleotides
Shew_0480: Shew_0480 - Sel1 domain-containing protein (RefSeq), at 537,510 to 538,568
_0480
Shew_0481: Shew_0481 - hypothetical protein (RefSeq), at 538,703 to 539,107
_0481
Shew_0482: Shew_0482 - hypothetical protein (RefSeq), at 539,397 to 540,563
_0482
Position (kb) 538
539
540 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 537.961 kb on - strand, within Shew_0480 at 538.003 kb on + strand, within Shew_0480 at 538.497 kb on - strand at 538.548 kb on + strand at 538.563 kb on + strand at 538.563 kb on + strand at 538.812 kb on + strand, within Shew_0481 at 538.898 kb on - strand, within Shew_0481 at 538.902 kb on - strand, within Shew_0481 at 538.948 kb on + strand, within Shew_0481 at 539.021 kb on + strand, within Shew_0481 at 539.077 kb on - strand at 539.105 kb on - strand at 539.190 kb on - strand at 539.192 kb on + strand at 539.200 kb on - strand at 539.320 kb on - strand at 539.551 kb on - strand, within Shew_0482 at 539.553 kb on + strand, within Shew_0482 at 539.630 kb on + strand, within Shew_0482 at 539.638 kb on - strand, within Shew_0482 at 539.638 kb on - strand, within Shew_0482 at 539.638 kb on - strand, within Shew_0482 at 539.689 kb on - strand, within Shew_0482 at 539.721 kb on - strand, within Shew_0482 at 539.861 kb on + strand, within Shew_0482
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 537,961 - Shew_0480 0.43 -1.7 538,003 + Shew_0480 0.47 +0.4 538,497 - +0.0 538,548 + -0.3 538,563 + -4.3 538,563 + +1.4 538,812 + Shew_0481 0.27 +0.8 538,898 - Shew_0481 0.48 +0.3 538,902 - Shew_0481 0.49 +0.2 538,948 + Shew_0481 0.60 +0.0 539,021 + Shew_0481 0.79 +2.3 539,077 - -1.3 539,105 - -0.0 539,190 - -0.8 539,192 + -0.3 539,200 - +0.6 539,320 - -2.4 539,551 - Shew_0482 0.13 -0.0 539,553 + Shew_0482 0.13 -0.5 539,630 + Shew_0482 0.20 +0.6 539,638 - Shew_0482 0.21 +1.2 539,638 - Shew_0482 0.21 +0.3 539,638 - Shew_0482 0.21 -3.1 539,689 - Shew_0482 0.25 +0.5 539,721 - Shew_0482 0.28 -0.4 539,861 + Shew_0482 0.40 +0.3
Or see this region's nucleotide sequence