Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0355 and Shew_0356 overlap by 4 nucleotides Shew_0356 and Shew_0357 overlap by 4 nucleotides Shew_0357 and Shew_0358 are separated by 180 nucleotides
Shew_0355: Shew_0355 - periplasmic copper-binding (RefSeq), at 403,215 to 404,573
_0355
Shew_0356: Shew_0356 - ABC transporter-related protein (RefSeq), at 404,570 to 405,499
_0356
Shew_0357: Shew_0357 - copper ABC transporter, permease protein (RefSeq), at 405,496 to 406,347
_0357
Shew_0358: Shew_0358 - transcriptional regulator, CadC (RefSeq), at 406,528 to 407,808
_0358
Position (kb) 405
406
407 Strain fitness (log2 ratio) -2
-1
0
1
2 at 404.597 kb on - strand at 404.721 kb on + strand, within Shew_0356 at 404.744 kb on - strand, within Shew_0356 at 404.853 kb on + strand, within Shew_0356 at 404.853 kb on + strand, within Shew_0356 at 404.861 kb on + strand, within Shew_0356 at 404.861 kb on - strand, within Shew_0356 at 404.861 kb on + strand, within Shew_0356 at 404.965 kb on - strand, within Shew_0356 at 405.017 kb on - strand, within Shew_0356 at 405.019 kb on + strand, within Shew_0356 at 405.022 kb on - strand, within Shew_0356 at 405.141 kb on + strand, within Shew_0356 at 405.149 kb on - strand, within Shew_0356 at 405.175 kb on - strand, within Shew_0356 at 405.175 kb on - strand, within Shew_0356 at 405.190 kb on + strand, within Shew_0356 at 405.213 kb on + strand, within Shew_0356 at 405.418 kb on + strand at 405.681 kb on - strand, within Shew_0357 at 405.683 kb on + strand, within Shew_0357 at 406.026 kb on - strand, within Shew_0357 at 406.078 kb on - strand, within Shew_0357 at 406.104 kb on - strand, within Shew_0357 at 406.305 kb on + strand at 406.393 kb on - strand at 407.263 kb on - strand, within Shew_0358
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 404,597 - -1.2 404,721 + Shew_0356 0.16 +0.9 404,744 - Shew_0356 0.19 -1.9 404,853 + Shew_0356 0.30 -1.7 404,853 + Shew_0356 0.30 +0.6 404,861 + Shew_0356 0.31 +0.2 404,861 - Shew_0356 0.31 +0.3 404,861 + Shew_0356 0.31 -0.5 404,965 - Shew_0356 0.42 +2.1 405,017 - Shew_0356 0.48 -1.3 405,019 + Shew_0356 0.48 -1.3 405,022 - Shew_0356 0.49 +0.3 405,141 + Shew_0356 0.61 -0.9 405,149 - Shew_0356 0.62 +0.3 405,175 - Shew_0356 0.65 +0.4 405,175 - Shew_0356 0.65 +0.4 405,190 + Shew_0356 0.67 +1.4 405,213 + Shew_0356 0.69 +1.1 405,418 + +0.1 405,681 - Shew_0357 0.22 -0.2 405,683 + Shew_0357 0.22 -0.2 406,026 - Shew_0357 0.62 -1.0 406,078 - Shew_0357 0.68 +0.5 406,104 - Shew_0357 0.71 -0.3 406,305 + +0.3 406,393 - -0.1 407,263 - Shew_0358 0.57 +0.5
Or see this region's nucleotide sequence