Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0343 and Shew_0344 are separated by 417 nucleotides Shew_0344 and Shew_0345 are separated by 125 nucleotides Shew_0345 and Shew_0346 overlap by 4 nucleotides
Shew_0343: Shew_0343 - hypothetical protein (RefSeq), at 390,657 to 391,235
_0343
Shew_0344: Shew_0344 - Na+/H+ antiporter NhaC (RefSeq), at 391,653 to 393,173
_0344
Shew_0345: Shew_0345 - redoxin domain-containing protein (RefSeq), at 393,299 to 393,934
_0345
Shew_0346: Shew_0346 - cytochrome C biogenesis protein (RefSeq), at 393,931 to 394,377
_0346
Position (kb) 391
392
393
394 Strain fitness (log2 ratio) -2
-1
0
1 at 390.711 kb on - strand at 391.047 kb on - strand, within Shew_0343 at 391.066 kb on + strand, within Shew_0343 at 392.110 kb on - strand, within Shew_0344 at 392.238 kb on - strand, within Shew_0344 at 392.247 kb on - strand, within Shew_0344 at 392.303 kb on + strand, within Shew_0344 at 392.318 kb on - strand, within Shew_0344 at 392.543 kb on + strand, within Shew_0344 at 392.713 kb on - strand, within Shew_0344 at 392.747 kb on - strand, within Shew_0344 at 392.957 kb on - strand, within Shew_0344 at 393.073 kb on + strand at 393.453 kb on - strand, within Shew_0345 at 393.486 kb on + strand, within Shew_0345 at 393.789 kb on + strand, within Shew_0345 at 393.896 kb on - strand at 394.129 kb on - strand, within Shew_0346
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 390,711 - +0.1 391,047 - Shew_0343 0.67 +0.9 391,066 + Shew_0343 0.71 +1.1 392,110 - Shew_0344 0.30 +0.4 392,238 - Shew_0344 0.38 -0.6 392,247 - Shew_0344 0.39 -0.6 392,303 + Shew_0344 0.43 -1.3 392,318 - Shew_0344 0.44 +0.8 392,543 + Shew_0344 0.59 +0.3 392,713 - Shew_0344 0.70 -2.3 392,747 - Shew_0344 0.72 -0.1 392,957 - Shew_0344 0.86 +0.6 393,073 + +0.4 393,453 - Shew_0345 0.24 +0.1 393,486 + Shew_0345 0.29 +1.1 393,789 + Shew_0345 0.77 -0.4 393,896 - +1.3 394,129 - Shew_0346 0.44 +0.0
Or see this region's nucleotide sequence