Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0036 and Shew_0037 are separated by 92 nucleotides Shew_0037 and Shew_0038 are separated by 162 nucleotides Shew_0038 and Shew_0039 are separated by 1 nucleotides
Shew_0036: Shew_0036 - phosphoesterase, PA-phosphatase related (RefSeq), at 41,568 to 42,389
_0036
Shew_0037: Shew_0037 - phosphoesterase, PA-phosphatase related (RefSeq), at 42,482 to 43,300
_0037
Shew_0038: Shew_0038 - excinuclease ABC subunit C (RefSeq), at 43,463 to 43,756
_0038
Shew_0039: Shew_0039 - oligopeptidase B (RefSeq), at 43,758 to 45,818
_0039
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1 at 41.549 kb on + strand at 41.565 kb on + strand at 41.611 kb on - strand at 41.808 kb on + strand, within Shew_0036 at 41.840 kb on + strand, within Shew_0036 at 41.908 kb on + strand, within Shew_0036 at 42.161 kb on + strand, within Shew_0036 at 42.218 kb on + strand, within Shew_0036 at 42.279 kb on + strand, within Shew_0036 at 42.372 kb on - strand at 42.462 kb on + strand at 42.513 kb on - strand at 42.637 kb on + strand, within Shew_0037 at 42.677 kb on - strand, within Shew_0037 at 42.798 kb on - strand, within Shew_0037 at 42.840 kb on - strand, within Shew_0037 at 42.869 kb on + strand, within Shew_0037 at 43.138 kb on - strand, within Shew_0037 at 43.192 kb on - strand, within Shew_0037 at 43.586 kb on - strand, within Shew_0038 at 43.621 kb on - strand, within Shew_0038 at 43.683 kb on + strand, within Shew_0038 at 43.691 kb on - strand, within Shew_0038 at 43.726 kb on + strand, within Shew_0038 at 43.940 kb on + strand at 43.955 kb on + strand at 43.955 kb on + strand at 44.135 kb on - strand, within Shew_0039 at 44.256 kb on + strand, within Shew_0039
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 41,549 + -0.0 41,565 + -0.2 41,611 - +0.0 41,808 + Shew_0036 0.29 -0.0 41,840 + Shew_0036 0.33 +0.2 41,908 + Shew_0036 0.41 -1.9 42,161 + Shew_0036 0.72 +0.1 42,218 + Shew_0036 0.79 -1.3 42,279 + Shew_0036 0.86 -0.3 42,372 - +0.3 42,462 + -0.8 42,513 - -0.6 42,637 + Shew_0037 0.19 +1.1 42,677 - Shew_0037 0.24 +0.6 42,798 - Shew_0037 0.39 -0.7 42,840 - Shew_0037 0.44 +0.3 42,869 + Shew_0037 0.47 -2.2 43,138 - Shew_0037 0.80 +0.3 43,192 - Shew_0037 0.87 +0.2 43,586 - Shew_0038 0.42 -0.1 43,621 - Shew_0038 0.54 +0.7 43,683 + Shew_0038 0.75 +0.1 43,691 - Shew_0038 0.78 +0.1 43,726 + Shew_0038 0.89 +0.0 43,940 + +0.1 43,955 + -0.3 43,955 + +0.2 44,135 - Shew_0039 0.18 +0.6 44,256 + Shew_0039 0.24 -0.5
Or see this region's nucleotide sequence