Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4656 and Pf6N2E2_4657 are separated by 24 nucleotides Pf6N2E2_4657 and Pf6N2E2_4658 are separated by 31 nucleotides Pf6N2E2_4658 and Pf6N2E2_4659 are separated by 56 nucleotides Pf6N2E2_4659 and Pf6N2E2_4660 are separated by 162 nucleotides
Pf6N2E2_4656 - D-erythrose-4-phosphate dehydrogenase, at 5,386,570 to 5,387,625
_4656
Pf6N2E2_4657 - Phosphoglycerate kinase (EC 2.7.2.3), at 5,387,650 to 5,388,813
_4657
Pf6N2E2_4658 - FIG00955006: hypothetical protein, at 5,388,845 to 5,389,069
_4658
Pf6N2E2_4659 - Lipoprotein, putative, at 5,389,126 to 5,389,458
_4659
Pf6N2E2_4660 - Fructose-bisphosphate aldolase class II (EC 4.1.2.13), at 5,389,621 to 5,390,685
_4660
Position (kb) 5387
5388
5389 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5386.789 kb on - strand, within Pf6N2E2_4656 at 5387.623 kb on + strand at 5388.957 kb on - strand, within Pf6N2E2_4658 at 5389.028 kb on + strand, within Pf6N2E2_4658 at 5389.028 kb on + strand, within Pf6N2E2_4658 at 5389.028 kb on + strand, within Pf6N2E2_4658 at 5389.028 kb on + strand, within Pf6N2E2_4658 at 5389.028 kb on + strand, within Pf6N2E2_4658 at 5389.028 kb on + strand, within Pf6N2E2_4658 at 5389.028 kb on + strand, within Pf6N2E2_4658 at 5389.029 kb on - strand, within Pf6N2E2_4658 at 5389.029 kb on - strand, within Pf6N2E2_4658 at 5389.083 kb on + strand at 5389.083 kb on + strand at 5389.084 kb on - strand at 5389.084 kb on - strand at 5389.084 kb on - strand at 5389.084 kb on - strand at 5389.157 kb on + strand at 5389.157 kb on + strand at 5389.157 kb on + strand at 5389.190 kb on + strand, within Pf6N2E2_4659 at 5389.191 kb on - strand, within Pf6N2E2_4659 at 5389.357 kb on + strand, within Pf6N2E2_4659 at 5389.408 kb on + strand, within Pf6N2E2_4659 at 5389.408 kb on + strand, within Pf6N2E2_4659 at 5389.408 kb on + strand, within Pf6N2E2_4659 at 5389.408 kb on + strand, within Pf6N2E2_4659 at 5389.408 kb on + strand, within Pf6N2E2_4659 at 5389.408 kb on + strand, within Pf6N2E2_4659 at 5389.408 kb on + strand, within Pf6N2E2_4659 at 5389.490 kb on + strand at 5389.492 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 5,386,789 - Pf6N2E2_4656 0.21 +1.9 5,387,623 + +1.3 5,388,957 - Pf6N2E2_4658 0.50 +0.3 5,389,028 + Pf6N2E2_4658 0.81 +1.0 5,389,028 + Pf6N2E2_4658 0.81 +0.7 5,389,028 + Pf6N2E2_4658 0.81 +1.4 5,389,028 + Pf6N2E2_4658 0.81 +0.3 5,389,028 + Pf6N2E2_4658 0.81 -1.4 5,389,028 + Pf6N2E2_4658 0.81 +1.0 5,389,028 + Pf6N2E2_4658 0.81 +0.4 5,389,029 - Pf6N2E2_4658 0.82 -1.4 5,389,029 - Pf6N2E2_4658 0.82 -1.0 5,389,083 + +0.2 5,389,083 + -0.4 5,389,084 - -0.1 5,389,084 - +0.9 5,389,084 - +1.9 5,389,084 - +0.3 5,389,157 + +0.3 5,389,157 + +0.9 5,389,157 + +0.1 5,389,190 + Pf6N2E2_4659 0.19 +0.1 5,389,191 - Pf6N2E2_4659 0.20 -0.5 5,389,357 + Pf6N2E2_4659 0.69 -1.9 5,389,408 + Pf6N2E2_4659 0.85 +0.2 5,389,408 + Pf6N2E2_4659 0.85 -0.1 5,389,408 + Pf6N2E2_4659 0.85 +0.4 5,389,408 + Pf6N2E2_4659 0.85 +0.5 5,389,408 + Pf6N2E2_4659 0.85 +0.0 5,389,408 + Pf6N2E2_4659 0.85 -0.4 5,389,408 + Pf6N2E2_4659 0.85 -0.0 5,389,490 + +0.9 5,389,492 + +1.5
Or see this region's nucleotide sequence