Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4437 and Pf6N2E2_4438 overlap by 4 nucleotides Pf6N2E2_4438 and Pf6N2E2_4439 are separated by 50 nucleotides
Pf6N2E2_4437 - Twin-arginine translocation protein TatB, at 5,168,942 to 5,170,117
_4437
Pf6N2E2_4438 - hypothetical protein, at 5,170,114 to 5,170,578
_4438
Pf6N2E2_4439 - Glutathione-regulated potassium-efflux system ATP-binding protein, at 5,170,629 to 5,172,539
_4439
Position (kb) 5170
5171 Strain fitness (log2 ratio) -1
0
1
2
3 at 5169.242 kb on + strand, within Pf6N2E2_4437 at 5169.242 kb on + strand, within Pf6N2E2_4437 at 5169.242 kb on + strand, within Pf6N2E2_4437 at 5169.242 kb on + strand, within Pf6N2E2_4437 at 5169.242 kb on + strand, within Pf6N2E2_4437 at 5169.243 kb on - strand, within Pf6N2E2_4437 at 5169.243 kb on - strand, within Pf6N2E2_4437 at 5169.243 kb on - strand, within Pf6N2E2_4437 at 5169.243 kb on - strand, within Pf6N2E2_4437 at 5169.243 kb on - strand, within Pf6N2E2_4437 at 5169.598 kb on + strand, within Pf6N2E2_4437 at 5169.598 kb on + strand, within Pf6N2E2_4437 at 5169.611 kb on - strand, within Pf6N2E2_4437 at 5169.647 kb on - strand, within Pf6N2E2_4437 at 5169.685 kb on - strand, within Pf6N2E2_4437 at 5170.115 kb on + strand at 5170.115 kb on + strand at 5170.116 kb on - strand at 5170.405 kb on + strand, within Pf6N2E2_4438 at 5170.405 kb on + strand, within Pf6N2E2_4438 at 5170.405 kb on + strand, within Pf6N2E2_4438 at 5170.406 kb on - strand, within Pf6N2E2_4438 at 5170.406 kb on - strand, within Pf6N2E2_4438 at 5170.525 kb on + strand, within Pf6N2E2_4438 at 5170.526 kb on - strand, within Pf6N2E2_4438 at 5170.541 kb on + strand at 5170.541 kb on + strand at 5170.541 kb on + strand at 5170.541 kb on + strand at 5170.584 kb on + strand at 5170.612 kb on + strand at 5170.612 kb on + strand at 5170.628 kb on + strand at 5170.629 kb on - strand at 5170.629 kb on - strand at 5170.654 kb on + strand at 5170.654 kb on + strand at 5170.655 kb on - strand at 5170.678 kb on + strand at 5170.678 kb on + strand at 5170.679 kb on - strand at 5170.679 kb on - strand at 5170.875 kb on + strand, within Pf6N2E2_4439 at 5170.875 kb on + strand, within Pf6N2E2_4439 at 5170.875 kb on + strand, within Pf6N2E2_4439 at 5170.875 kb on + strand, within Pf6N2E2_4439 at 5170.876 kb on - strand, within Pf6N2E2_4439 at 5170.876 kb on - strand, within Pf6N2E2_4439 at 5170.995 kb on + strand, within Pf6N2E2_4439 at 5170.996 kb on - strand, within Pf6N2E2_4439 at 5171.042 kb on + strand, within Pf6N2E2_4439 at 5171.307 kb on + strand, within Pf6N2E2_4439 at 5171.307 kb on + strand, within Pf6N2E2_4439 at 5171.308 kb on - strand, within Pf6N2E2_4439 at 5171.321 kb on + strand, within Pf6N2E2_4439 at 5171.373 kb on + strand, within Pf6N2E2_4439 at 5171.412 kb on + strand, within Pf6N2E2_4439 at 5171.412 kb on + strand, within Pf6N2E2_4439 at 5171.412 kb on + strand, within Pf6N2E2_4439 at 5171.412 kb on + strand, within Pf6N2E2_4439 at 5171.412 kb on + strand, within Pf6N2E2_4439 at 5171.413 kb on - strand, within Pf6N2E2_4439 at 5171.413 kb on - strand, within Pf6N2E2_4439
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 5,169,242 + Pf6N2E2_4437 0.26 +2.4 5,169,242 + Pf6N2E2_4437 0.26 +2.5 5,169,242 + Pf6N2E2_4437 0.26 +3.3 5,169,242 + Pf6N2E2_4437 0.26 +2.1 5,169,242 + Pf6N2E2_4437 0.26 +1.1 5,169,243 - Pf6N2E2_4437 0.26 -1.0 5,169,243 - Pf6N2E2_4437 0.26 +1.2 5,169,243 - Pf6N2E2_4437 0.26 +2.3 5,169,243 - Pf6N2E2_4437 0.26 +1.4 5,169,243 - Pf6N2E2_4437 0.26 +2.2 5,169,598 + Pf6N2E2_4437 0.56 +0.2 5,169,598 + Pf6N2E2_4437 0.56 +1.3 5,169,611 - Pf6N2E2_4437 0.57 +1.1 5,169,647 - Pf6N2E2_4437 0.60 +0.8 5,169,685 - Pf6N2E2_4437 0.63 +2.2 5,170,115 + +0.9 5,170,115 + +0.9 5,170,116 - +0.6 5,170,405 + Pf6N2E2_4438 0.63 +0.1 5,170,405 + Pf6N2E2_4438 0.63 +0.0 5,170,405 + Pf6N2E2_4438 0.63 +0.5 5,170,406 - Pf6N2E2_4438 0.63 -0.3 5,170,406 - Pf6N2E2_4438 0.63 -0.2 5,170,525 + Pf6N2E2_4438 0.88 -0.4 5,170,526 - Pf6N2E2_4438 0.89 +1.3 5,170,541 + -0.1 5,170,541 + +0.1 5,170,541 + -0.4 5,170,541 + +0.8 5,170,584 + +0.4 5,170,612 + +1.0 5,170,612 + +1.4 5,170,628 + -0.7 5,170,629 - +0.4 5,170,629 - +0.5 5,170,654 + -0.1 5,170,654 + +0.5 5,170,655 - +1.0 5,170,678 + +0.2 5,170,678 + -0.1 5,170,679 - +0.4 5,170,679 - -0.6 5,170,875 + Pf6N2E2_4439 0.13 +0.1 5,170,875 + Pf6N2E2_4439 0.13 -0.7 5,170,875 + Pf6N2E2_4439 0.13 -0.0 5,170,875 + Pf6N2E2_4439 0.13 -0.8 5,170,876 - Pf6N2E2_4439 0.13 +0.1 5,170,876 - Pf6N2E2_4439 0.13 -0.5 5,170,995 + Pf6N2E2_4439 0.19 +0.0 5,170,996 - Pf6N2E2_4439 0.19 -0.1 5,171,042 + Pf6N2E2_4439 0.22 -0.8 5,171,307 + Pf6N2E2_4439 0.35 -0.3 5,171,307 + Pf6N2E2_4439 0.35 -0.7 5,171,308 - Pf6N2E2_4439 0.36 +0.2 5,171,321 + Pf6N2E2_4439 0.36 -0.5 5,171,373 + Pf6N2E2_4439 0.39 -0.2 5,171,412 + Pf6N2E2_4439 0.41 -0.7 5,171,412 + Pf6N2E2_4439 0.41 -0.3 5,171,412 + Pf6N2E2_4439 0.41 -0.3 5,171,412 + Pf6N2E2_4439 0.41 -0.7 5,171,412 + Pf6N2E2_4439 0.41 +0.2 5,171,413 - Pf6N2E2_4439 0.41 -0.8 5,171,413 - Pf6N2E2_4439 0.41 +0.6
Or see this region's nucleotide sequence