Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3811 and Pf6N2E2_3812 are separated by 113 nucleotides Pf6N2E2_3812 and Pf6N2E2_3813 are separated by 3 nucleotides Pf6N2E2_3813 and Pf6N2E2_3814 are separated by 235 nucleotides
Pf6N2E2_3811 - Methyl-accepting chemotaxis protein, at 4,440,114 to 4,441,994
_3811
Pf6N2E2_3812 - FIG027190: Putative transmembrane protein, at 4,442,108 to 4,442,704
_3812
Pf6N2E2_3813 - Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11), at 4,442,708 to 4,443,718
_3813
Pf6N2E2_3814 - Probable transmembrane protein, at 4,443,954 to 4,445,330
_3814
Position (kb) 4442
4443
4444 Strain fitness (log2 ratio) -2
-1
0
1 at 4441.784 kb on + strand, within Pf6N2E2_3811 at 4441.784 kb on + strand, within Pf6N2E2_3811 at 4441.784 kb on + strand, within Pf6N2E2_3811 at 4441.785 kb on - strand, within Pf6N2E2_3811 at 4441.979 kb on + strand at 4441.980 kb on - strand at 4441.992 kb on + strand at 4441.992 kb on + strand at 4441.992 kb on + strand at 4441.993 kb on - strand at 4442.036 kb on + strand at 4442.095 kb on + strand at 4442.352 kb on + strand, within Pf6N2E2_3812 at 4442.352 kb on + strand, within Pf6N2E2_3812 at 4442.353 kb on - strand, within Pf6N2E2_3812 at 4442.360 kb on + strand, within Pf6N2E2_3812 at 4442.360 kb on + strand, within Pf6N2E2_3812 at 4442.360 kb on + strand, within Pf6N2E2_3812 at 4442.360 kb on + strand, within Pf6N2E2_3812 at 4442.360 kb on + strand, within Pf6N2E2_3812 at 4442.361 kb on - strand, within Pf6N2E2_3812 at 4442.361 kb on - strand, within Pf6N2E2_3812 at 4442.709 kb on + strand at 4442.710 kb on - strand at 4442.710 kb on - strand at 4442.710 kb on - strand at 4442.710 kb on - strand at 4443.779 kb on - strand at 4443.779 kb on - strand at 4443.789 kb on - strand at 4443.789 kb on - strand at 4443.789 kb on - strand at 4443.789 kb on - strand at 4443.918 kb on + strand at 4443.918 kb on + strand at 4444.011 kb on + strand at 4444.012 kb on - strand at 4444.012 kb on - strand at 4444.012 kb on - strand at 4444.012 kb on - strand at 4444.131 kb on - strand, within Pf6N2E2_3814 at 4444.159 kb on + strand, within Pf6N2E2_3814 at 4444.552 kb on + strand, within Pf6N2E2_3814 at 4444.552 kb on + strand, within Pf6N2E2_3814 at 4444.552 kb on + strand, within Pf6N2E2_3814 at 4444.552 kb on + strand, within Pf6N2E2_3814 at 4444.552 kb on + strand, within Pf6N2E2_3814 at 4444.553 kb on - strand, within Pf6N2E2_3814 at 4444.553 kb on - strand, within Pf6N2E2_3814 at 4444.553 kb on - strand, within Pf6N2E2_3814 at 4444.553 kb on - strand, within Pf6N2E2_3814 at 4444.553 kb on - strand, within Pf6N2E2_3814 at 4444.553 kb on - strand, within Pf6N2E2_3814 at 4444.694 kb on - strand, within Pf6N2E2_3814
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 4,441,784 + Pf6N2E2_3811 0.89 -0.2 4,441,784 + Pf6N2E2_3811 0.89 -0.3 4,441,784 + Pf6N2E2_3811 0.89 -0.1 4,441,785 - Pf6N2E2_3811 0.89 +0.5 4,441,979 + +0.3 4,441,980 - -0.4 4,441,992 + +0.4 4,441,992 + +0.4 4,441,992 + -0.4 4,441,993 - -0.2 4,442,036 + -0.1 4,442,095 + +1.0 4,442,352 + Pf6N2E2_3812 0.41 +1.0 4,442,352 + Pf6N2E2_3812 0.41 +1.0 4,442,353 - Pf6N2E2_3812 0.41 +0.2 4,442,360 + Pf6N2E2_3812 0.42 +0.4 4,442,360 + Pf6N2E2_3812 0.42 +1.1 4,442,360 + Pf6N2E2_3812 0.42 +0.9 4,442,360 + Pf6N2E2_3812 0.42 -0.2 4,442,360 + Pf6N2E2_3812 0.42 -0.0 4,442,361 - Pf6N2E2_3812 0.42 +0.4 4,442,361 - Pf6N2E2_3812 0.42 -0.5 4,442,709 + -0.0 4,442,710 - -1.3 4,442,710 - -0.2 4,442,710 - -0.6 4,442,710 - +0.5 4,443,779 - -0.3 4,443,779 - -0.4 4,443,789 - +0.3 4,443,789 - +1.1 4,443,789 - -0.7 4,443,789 - +0.4 4,443,918 + -1.0 4,443,918 + -0.9 4,444,011 + -0.6 4,444,012 - -1.0 4,444,012 - +1.0 4,444,012 - -0.4 4,444,012 - -0.5 4,444,131 - Pf6N2E2_3814 0.13 +0.0 4,444,159 + Pf6N2E2_3814 0.15 +0.0 4,444,552 + Pf6N2E2_3814 0.43 +0.0 4,444,552 + Pf6N2E2_3814 0.43 +0.2 4,444,552 + Pf6N2E2_3814 0.43 +0.2 4,444,552 + Pf6N2E2_3814 0.43 -0.2 4,444,552 + Pf6N2E2_3814 0.43 -0.5 4,444,553 - Pf6N2E2_3814 0.44 -1.8 4,444,553 - Pf6N2E2_3814 0.44 -0.7 4,444,553 - Pf6N2E2_3814 0.44 +1.3 4,444,553 - Pf6N2E2_3814 0.44 +0.2 4,444,553 - Pf6N2E2_3814 0.44 +0.3 4,444,553 - Pf6N2E2_3814 0.44 +0.3 4,444,694 - Pf6N2E2_3814 0.54 -1.9
Or see this region's nucleotide sequence