Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_365 and Pf6N2E2_366 overlap by 4 nucleotides Pf6N2E2_366 and Pf6N2E2_367 overlap by 4 nucleotides
Pf6N2E2_365 - Ferredoxin reductase, at 431,089 to 432,480
_365
Pf6N2E2_366 - Opine oxidase subunit B, at 432,477 to 433,631
_366
Pf6N2E2_367 - Acetylornithine deacetylase (EC 3.5.1.16), at 433,628 to 434,785
_367
Position (kb) 432
433
434 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 431.500 kb on + strand, within Pf6N2E2_365 at 431.500 kb on + strand, within Pf6N2E2_365 at 431.500 kb on + strand, within Pf6N2E2_365 at 431.500 kb on + strand, within Pf6N2E2_365 at 431.501 kb on - strand, within Pf6N2E2_365 at 431.590 kb on + strand, within Pf6N2E2_365 at 431.590 kb on + strand, within Pf6N2E2_365 at 431.591 kb on - strand, within Pf6N2E2_365 at 431.740 kb on + strand, within Pf6N2E2_365 at 432.488 kb on + strand at 432.488 kb on + strand at 432.772 kb on + strand, within Pf6N2E2_366 at 432.895 kb on - strand, within Pf6N2E2_366 at 433.177 kb on - strand, within Pf6N2E2_366 at 433.177 kb on - strand, within Pf6N2E2_366 at 433.204 kb on - strand, within Pf6N2E2_366 at 433.204 kb on - strand, within Pf6N2E2_366 at 433.231 kb on - strand, within Pf6N2E2_366 at 433.231 kb on - strand, within Pf6N2E2_366 at 433.256 kb on + strand, within Pf6N2E2_366 at 433.256 kb on + strand, within Pf6N2E2_366 at 433.311 kb on + strand, within Pf6N2E2_366 at 433.311 kb on + strand, within Pf6N2E2_366 at 433.311 kb on + strand, within Pf6N2E2_366 at 433.312 kb on - strand, within Pf6N2E2_366 at 433.312 kb on - strand, within Pf6N2E2_366 at 433.416 kb on + strand, within Pf6N2E2_366 at 433.470 kb on + strand, within Pf6N2E2_366 at 433.470 kb on + strand, within Pf6N2E2_366 at 433.470 kb on + strand, within Pf6N2E2_366 at 433.470 kb on + strand, within Pf6N2E2_366 at 433.470 kb on + strand, within Pf6N2E2_366 at 433.470 kb on + strand, within Pf6N2E2_366 at 433.471 kb on - strand, within Pf6N2E2_366 at 433.471 kb on - strand, within Pf6N2E2_366 at 433.471 kb on - strand, within Pf6N2E2_366 at 433.471 kb on - strand, within Pf6N2E2_366 at 433.471 kb on - strand, within Pf6N2E2_366 at 433.471 kb on - strand, within Pf6N2E2_366 at 433.474 kb on - strand, within Pf6N2E2_366 at 433.474 kb on - strand, within Pf6N2E2_366 at 433.474 kb on - strand, within Pf6N2E2_366 at 433.474 kb on - strand, within Pf6N2E2_366 at 433.642 kb on - strand at 433.917 kb on - strand, within Pf6N2E2_367 at 433.917 kb on - strand, within Pf6N2E2_367 at 434.318 kb on + strand, within Pf6N2E2_367 at 434.528 kb on + strand, within Pf6N2E2_367
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 431,500 + Pf6N2E2_365 0.30 +0.3 431,500 + Pf6N2E2_365 0.30 +0.9 431,500 + Pf6N2E2_365 0.30 +1.1 431,500 + Pf6N2E2_365 0.30 -0.6 431,501 - Pf6N2E2_365 0.30 -0.2 431,590 + Pf6N2E2_365 0.36 -0.1 431,590 + Pf6N2E2_365 0.36 +0.9 431,591 - Pf6N2E2_365 0.36 +0.5 431,740 + Pf6N2E2_365 0.47 -1.2 432,488 + -0.0 432,488 + +0.8 432,772 + Pf6N2E2_366 0.26 +0.5 432,895 - Pf6N2E2_366 0.36 +0.7 433,177 - Pf6N2E2_366 0.61 -0.7 433,177 - Pf6N2E2_366 0.61 +0.7 433,204 - Pf6N2E2_366 0.63 -0.0 433,204 - Pf6N2E2_366 0.63 +0.3 433,231 - Pf6N2E2_366 0.65 +0.3 433,231 - Pf6N2E2_366 0.65 +0.6 433,256 + Pf6N2E2_366 0.67 +0.8 433,256 + Pf6N2E2_366 0.67 +1.5 433,311 + Pf6N2E2_366 0.72 +3.0 433,311 + Pf6N2E2_366 0.72 +0.7 433,311 + Pf6N2E2_366 0.72 +0.2 433,312 - Pf6N2E2_366 0.72 -0.3 433,312 - Pf6N2E2_366 0.72 +0.4 433,416 + Pf6N2E2_366 0.81 +1.9 433,470 + Pf6N2E2_366 0.86 -0.2 433,470 + Pf6N2E2_366 0.86 +0.9 433,470 + Pf6N2E2_366 0.86 +1.2 433,470 + Pf6N2E2_366 0.86 -0.3 433,470 + Pf6N2E2_366 0.86 +0.4 433,470 + Pf6N2E2_366 0.86 -1.9 433,471 - Pf6N2E2_366 0.86 +0.8 433,471 - Pf6N2E2_366 0.86 +1.1 433,471 - Pf6N2E2_366 0.86 -0.1 433,471 - Pf6N2E2_366 0.86 -0.2 433,471 - Pf6N2E2_366 0.86 -0.4 433,471 - Pf6N2E2_366 0.86 +1.2 433,474 - Pf6N2E2_366 0.86 -0.3 433,474 - Pf6N2E2_366 0.86 -0.3 433,474 - Pf6N2E2_366 0.86 -0.7 433,474 - Pf6N2E2_366 0.86 +1.1 433,642 - +0.3 433,917 - Pf6N2E2_367 0.25 +0.7 433,917 - Pf6N2E2_367 0.25 +0.2 434,318 + Pf6N2E2_367 0.60 +1.3 434,528 + Pf6N2E2_367 0.78 -0.1
Or see this region's nucleotide sequence