Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2998

Experiment: D-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (C)
3,487,594	+		Pf6N2E2_2996	0.70	-0.1
3,487,595	-		Pf6N2E2_2996	0.70	+0.1
3,487,739	+				+0.2
3,487,739	+				+0.1
3,487,740	-				-0.2
3,487,740	-				+0.1
3,487,740	-				+0.0
3,487,755	-				-0.3
3,487,763	+				+0.6
3,487,764	-				-0.6
3,487,833	-				-0.0
3,487,883	-				-1.4
3,487,900	+				+0.3
3,487,900	+				+0.0
3,487,901	-				-1.1
3,487,901	-				+0.2
3,487,901	-				-0.4
3,487,901	-				-0.8
3,487,901	-				-0.0
3,487,901	-				-0.7
3,487,901	-				-1.0
3,487,901	-				-0.8
3,487,901	-				-1.6
3,488,014	+				-0.8
3,488,014	+				+1.5
3,488,014	+				+0.2
3,488,015	-				-0.6
3,488,015	-				-1.5
3,488,019	-				-0.0
3,488,019	-				+0.1
3,488,019	-				-0.9
3,488,083	-		Pf6N2E2_2997	0.17	-1.6
3,488,100	+		Pf6N2E2_2997	0.21	+1.4
3,488,102	+		Pf6N2E2_2997	0.22	-0.2
3,488,102	+		Pf6N2E2_2997	0.22	-0.6
3,488,102	+		Pf6N2E2_2997	0.22	-2.7
3,488,102	+		Pf6N2E2_2997	0.22	+0.8
3,488,103	-		Pf6N2E2_2997	0.22	+0.3
3,488,103	-		Pf6N2E2_2997	0.22	+0.5
3,488,103	-		Pf6N2E2_2997	0.22	-1.2
3,488,166	-		Pf6N2E2_2997	0.38	-0.3
3,488,166	-		Pf6N2E2_2997	0.38	+0.4
3,488,179	+		Pf6N2E2_2997	0.42	-0.2
3,488,182	-		Pf6N2E2_2997	0.42	+1.2
3,488,182	-		Pf6N2E2_2997	0.42	+0.3
3,488,182	-		Pf6N2E2_2997	0.42	-1.2
3,488,290	-		Pf6N2E2_2997	0.70	-0.1
3,488,290	-		Pf6N2E2_2997	0.70	+0.1
3,488,294	+		Pf6N2E2_2997	0.71	-0.2
3,488,294	+		Pf6N2E2_2997	0.71	-0.8
3,488,294	+		Pf6N2E2_2997	0.71	-0.2
3,488,294	+		Pf6N2E2_2997	0.71	+0.4
3,488,294	+		Pf6N2E2_2997	0.71	+0.4
3,488,294	+		Pf6N2E2_2997	0.71	+1.4
3,488,294	+		Pf6N2E2_2997	0.71	-1.8
3,488,295	-		Pf6N2E2_2997	0.71	-1.8
3,488,295	-		Pf6N2E2_2997	0.71	-1.6
3,488,295	-		Pf6N2E2_2997	0.71	+1.7
3,488,295	-		Pf6N2E2_2997	0.71	-0.6
3,488,295	-		Pf6N2E2_2997	0.71	-3.1
3,488,295	-		Pf6N2E2_2997	0.71	-1.0
3,488,295	-		Pf6N2E2_2997	0.71	-1.2
3,488,295	-		Pf6N2E2_2997	0.71	+1.2
3,488,323	+		Pf6N2E2_2997	0.78	+0.9
3,488,323	+		Pf6N2E2_2997	0.78	-1.0
3,488,324	-		Pf6N2E2_2997	0.79	+0.1
3,488,324	-		Pf6N2E2_2997	0.79	+0.1
3,488,324	-		Pf6N2E2_2997	0.79	+1.4
3,488,421	+				+0.5
3,488,421	+				+0.1
3,488,422	-				+0.9
3,488,422	-				-0.8
3,488,439	+				+0.9
3,488,439	+				+0.8
3,488,440	-				-0.2
3,488,440	-				+0.2
3,488,440	-				-0.2
3,488,440	-				+0.6
3,488,487	+				-0.2
3,488,488	-				-0.1
3,488,563	+				+0.4
3,488,563	+				+0.9
3,488,563	+				+0.2
3,488,563	+				+0.3
3,488,563	+				+0.2
3,488,564	-				+0.1
3,488,570	+				+0.7
3,488,571	-				+1.5
3,488,571	-				+0.8
3,488,597	+				-1.2
3,488,597	+				+0.1
3,488,644	-				+0.9
3,488,653	+				-1.5
3,488,654	-				+0.4
3,488,654	-				+1.1
3,488,654	-				+0.4
3,488,827	+		Pf6N2E2_2998	0.22	-0.7
3,488,828	-		Pf6N2E2_2998	0.22	-0.2
3,488,934	-		Pf6N2E2_2998	0.32	-1.5
3,489,124	+		Pf6N2E2_2998	0.49	-0.5
3,489,124	+		Pf6N2E2_2998	0.49	+0.4
3,489,124	+		Pf6N2E2_2998	0.49	+0.1
3,489,125	-		Pf6N2E2_2998	0.49	-0.0
3,489,125	-		Pf6N2E2_2998	0.49	-0.6
3,489,200	+		Pf6N2E2_2998	0.56	-1.0
3,489,200	+		Pf6N2E2_2998	0.56	+0.4
3,489,200	+		Pf6N2E2_2998	0.56	+1.2
3,489,200	+		Pf6N2E2_2998	0.56	-0.3
3,489,201	-		Pf6N2E2_2998	0.56	-2.5
3,489,203	+		Pf6N2E2_2998	0.56	-0.0
3,489,203	+		Pf6N2E2_2998	0.56	-1.8
3,489,203	+		Pf6N2E2_2998	0.56	+1.6
3,489,204	-		Pf6N2E2_2998	0.57	-0.4
3,489,204	-		Pf6N2E2_2998	0.57	-1.2
3,489,204	-		Pf6N2E2_2998	0.57	-0.3
3,489,208	+		Pf6N2E2_2998	0.57	+0.5
3,489,208	+		Pf6N2E2_2998	0.57	-0.3
3,489,208	+		Pf6N2E2_2998	0.57	+0.9
3,489,209	-		Pf6N2E2_2998	0.57	-1.0
3,489,209	-		Pf6N2E2_2998	0.57	-0.1
3,489,389	+		Pf6N2E2_2998	0.73	-2.0
3,489,390	-		Pf6N2E2_2998	0.74	-1.0
3,489,440	-		Pf6N2E2_2998	0.78	+0.4
3,489,455	-		Pf6N2E2_2998	0.79	-0.0
3,489,684	+				-1.2
3,489,685	-				+0.0
3,489,695	+				+2.9
3,489,695	+				-0.3
3,489,696	-				+0.2
3,490,000	+		Pf6N2E2_2999	0.57	+2.6
3,490,000	+		Pf6N2E2_2999	0.57	+1.2
3,490,096	-		Pf6N2E2_2999	0.76	+1.7
3,490,149	-		Pf6N2E2_2999	0.86	+0.9
3,490,189	+				+0.3
3,490,189	+				-0.0
3,490,190	-				+1.2
3,490,259	-				+1.5
3,490,259	-				-0.1
3,490,274	-				-0.2
3,490,429	+		Pf6N2E2_3000	0.18	-2.1
3,490,438	+		Pf6N2E2_3000	0.19	+0.2
3,490,477	+		Pf6N2E2_3000	0.23	-0.6
3,490,477	+		Pf6N2E2_3000	0.23	+1.0
3,490,477	+		Pf6N2E2_3000	0.23	+0.9
3,490,477	+		Pf6N2E2_3000	0.23	+0.1
3,490,477	+		Pf6N2E2_3000	0.23	+0.4
3,490,477	+		Pf6N2E2_3000	0.23	+1.7
3,490,477	+				+0.4
3,490,477	+		Pf6N2E2_3000	0.23	+1.0
3,490,477	+		Pf6N2E2_3000	0.23	+0.4
3,490,477	+		Pf6N2E2_3000	0.23	-0.1
3,490,477	+		Pf6N2E2_3000	0.23	-0.7
3,490,477	+		Pf6N2E2_3000	0.23	+0.8
3,490,477	+		Pf6N2E2_3000	0.23	-1.6
3,490,477	+		Pf6N2E2_3000	0.23	+0.8
3,490,478	-		Pf6N2E2_3000	0.23	+0.8
3,490,478	-		Pf6N2E2_3000	0.23	-0.6
3,490,478	-		Pf6N2E2_3000	0.23	+0.3
3,490,478	-		Pf6N2E2_3000	0.23	+0.7
3,490,478	-		Pf6N2E2_3000	0.23	+0.1
3,490,478	-		Pf6N2E2_3000	0.23	+1.7
3,490,478	-		Pf6N2E2_3000	0.23	-1.8
3,490,478	-		Pf6N2E2_3000	0.23	+0.2
3,490,478	-		Pf6N2E2_3000	0.23	-0.2
3,490,478	-		Pf6N2E2_3000	0.23	+0.5
3,490,478	-		Pf6N2E2_3000	0.23	-0.7
3,490,478	-		Pf6N2E2_3000	0.23	+1.5
3,490,478	-		Pf6N2E2_3000	0.23	+0.2
3,490,478	-		Pf6N2E2_3000	0.23	+0.2
3,490,479	+		Pf6N2E2_3000	0.23	-0.9
3,490,522	+		Pf6N2E2_3000	0.26	+1.2
3,490,522	+		Pf6N2E2_3000	0.26	-0.0
3,490,545	+		Pf6N2E2_3000	0.28	-0.0
3,490,545	+		Pf6N2E2_3000	0.28	-0.3
3,490,545	+		Pf6N2E2_3000	0.28	-0.4
3,490,545	+		Pf6N2E2_3000	0.28	+0.5
3,490,545	+		Pf6N2E2_3000	0.28	-1.2
3,490,545	+		Pf6N2E2_3000	0.28	+0.2
3,490,545	+		Pf6N2E2_3000	0.28	-0.3
3,490,545	+		Pf6N2E2_3000	0.28	-0.1
3,490,545	+		Pf6N2E2_3000	0.28	-0.0
3,490,546	-		Pf6N2E2_3000	0.29	-0.6
3,490,546	-		Pf6N2E2_3000	0.29	-0.1
3,490,546	-		Pf6N2E2_3000	0.29	+0.5
3,490,551	+		Pf6N2E2_3000	0.29	+0.6
3,490,551	+		Pf6N2E2_3000	0.29	-0.5
3,490,551	+		Pf6N2E2_3000	0.29	+1.4
3,490,551	+		Pf6N2E2_3000	0.29	-0.0
3,490,551	+		Pf6N2E2_3000	0.29	+1.0
3,490,551	+		Pf6N2E2_3000	0.29	-0.7
3,490,551	+		Pf6N2E2_3000	0.29	-0.3
3,490,551	+		Pf6N2E2_3000	0.29	+0.9
3,490,551	+		Pf6N2E2_3000	0.29	+0.0
3,490,552	-		Pf6N2E2_3000	0.29	+1.9
3,490,552	-		Pf6N2E2_3000	0.29	+1.2
3,490,552	-		Pf6N2E2_3000	0.29	+0.5
3,490,552	-		Pf6N2E2_3000	0.29	-0.1
3,490,668	+		Pf6N2E2_3000	0.39	-0.3
3,490,669	-		Pf6N2E2_3000	0.39	+0.3
3,490,669	-		Pf6N2E2_3000	0.39	+0.5