Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17180

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
3,752,477	+				+0.7
3,752,477	+				+0.4
3,752,477	+				+2.1
3,752,477	+				+0.0
3,752,477	+				-1.2
3,752,478	-				-0.2
3,752,478	-				-0.2
3,752,478	-				-0.5
3,752,794	-		LRK54_RS17175	0.36	+1.3
3,752,823	+		LRK54_RS17175	0.40	+0.8
3,752,824	-		LRK54_RS17175	0.40	+0.6
3,752,824	-		LRK54_RS17175	0.40	-0.7
3,752,824	-		LRK54_RS17175	0.40	-0.0
3,752,913	+		LRK54_RS17175	0.52	+0.0
3,752,913	+		LRK54_RS17175	0.52	-0.1
3,752,914	-		LRK54_RS17175	0.52	-0.7
3,752,914	-		LRK54_RS17175	0.52	+0.5
3,752,914	-		LRK54_RS17175	0.52	-0.2
3,752,914	-		LRK54_RS17175	0.52	-0.2
3,752,981	+		LRK54_RS17175	0.61	+1.5
3,752,981	+		LRK54_RS17175	0.61	-0.3
3,752,981	+		LRK54_RS17175	0.61	+0.0
3,752,981	+		LRK54_RS17175	0.61	+0.7
3,752,981	+		LRK54_RS17175	0.61	+0.9
3,752,981	+		LRK54_RS17175	0.61	+0.0
3,752,981	+		LRK54_RS17175	0.61	-2.0
3,752,981	+		LRK54_RS17175	0.61	+1.5
3,752,981	+		LRK54_RS17175	0.61	-0.1
3,752,981	+		LRK54_RS17175	0.61	-0.1
3,752,981	+		LRK54_RS17175	0.61	-1.6
3,752,981	+		LRK54_RS17175	0.61	+1.4
3,752,981	+		LRK54_RS17175	0.61	+1.0
3,752,981	+		LRK54_RS17175	0.61	+0.4
3,752,982	-		LRK54_RS17175	0.61	-0.5
3,752,982	-		LRK54_RS17175	0.61	-0.8
3,752,982	-		LRK54_RS17175	0.61	-1.1
3,752,982	-		LRK54_RS17175	0.61	+0.1
3,752,982	-		LRK54_RS17175	0.61	+0.6
3,752,982	-		LRK54_RS17175	0.61	+0.2
3,752,982	-		LRK54_RS17175	0.61	+0.5
3,752,982	-		LRK54_RS17175	0.61	-0.7
3,752,982	-		LRK54_RS17175	0.61	+0.5
3,752,982	-		LRK54_RS17175	0.61	-0.0
3,752,982	-		LRK54_RS17175	0.61	+0.0
3,752,982	-		LRK54_RS17175	0.61	-0.5
3,752,982	-		LRK54_RS17175	0.61	-0.2
3,752,982	-		LRK54_RS17175	0.61	+0.8
3,752,982	-		LRK54_RS17175	0.61	-0.9
3,752,982	-		LRK54_RS17175	0.61	+2.6
3,752,982	-		LRK54_RS17175	0.61	+0.3
3,752,982	-		LRK54_RS17175	0.61	-2.0
3,753,024	+		LRK54_RS17175	0.67	-0.2
3,753,024	+		LRK54_RS17175	0.67	-0.9
3,753,024	+		LRK54_RS17175	0.67	-0.1
3,753,024	+		LRK54_RS17175	0.67	+0.0
3,753,025	-		LRK54_RS17175	0.67	-0.3
3,753,025	-		LRK54_RS17175	0.67	+2.4
3,753,025	-		LRK54_RS17175	0.67	+0.2
3,753,025	-		LRK54_RS17175	0.67	-0.6
3,753,025	-		LRK54_RS17175	0.67	+0.1
3,753,025	-		LRK54_RS17175	0.67	+0.2
3,753,025	-		LRK54_RS17175	0.67	+0.1
3,753,025	-		LRK54_RS17175	0.67	-0.6
3,753,025	-		LRK54_RS17175	0.67	+0.1
3,753,025	-		LRK54_RS17175	0.67	+0.9
3,753,084	+		LRK54_RS17175	0.74	+0.3
3,753,084	+		LRK54_RS17175	0.74	+1.3
3,753,084	+		LRK54_RS17175	0.74	+2.4
3,753,084	+		LRK54_RS17175	0.74	+0.9
3,753,084	+		LRK54_RS17175	0.74	+0.1
3,753,084	+		LRK54_RS17175	0.74	-0.6
3,753,084	+		LRK54_RS17175	0.74	+0.8
3,753,084	+		LRK54_RS17175	0.74	+2.0
3,753,085	-		LRK54_RS17175	0.75	+1.0
3,753,085	-		LRK54_RS17175	0.75	-0.2
3,753,085	-		LRK54_RS17175	0.75	-1.9
3,753,085	-		LRK54_RS17175	0.75	+0.2
3,753,085	-		LRK54_RS17175	0.75	-0.2
3,753,085	-		LRK54_RS17175	0.75	+0.1
3,753,085	-		LRK54_RS17175	0.75	+1.7
3,753,085	-		LRK54_RS17175	0.75	+0.4
3,753,085	-		LRK54_RS17175	0.75	-1.5
3,753,085	-		LRK54_RS17175	0.75	+0.5
3,753,085	-		LRK54_RS17175	0.75	-0.1
3,753,085	-		LRK54_RS17175	0.75	+2.1
3,753,165	+		LRK54_RS17175	0.85	+1.7
3,753,165	+		LRK54_RS17175	0.85	-0.8
3,753,165	+		LRK54_RS17175	0.85	+0.5
3,753,165	+		LRK54_RS17175	0.85	+0.4
3,753,166	-		LRK54_RS17175	0.85	-1.1
3,753,166	-		LRK54_RS17175	0.85	-0.6
3,753,166	-		LRK54_RS17175	0.85	+0.8
3,753,166	-		LRK54_RS17175	0.85	-0.4
3,753,166	-		LRK54_RS17175	0.85	-0.3
3,753,166	-		LRK54_RS17175	0.85	+0.1
3,753,166	-		LRK54_RS17175	0.85	+0.3
3,753,166	-		LRK54_RS17175	0.85	-0.4
3,753,201	+		LRK54_RS17175	0.90	+0.7
3,753,219	+				+1.2
3,753,220	-				-1.2
3,753,228	+				+0.6
3,753,229	-				+1.3
3,753,229	-				+1.2
3,753,229	-				+0.1
3,753,229	-				+0.2
3,753,229	-				-0.2
3,753,229	-				+1.1
3,753,229	-				-0.1
3,753,277	-				+2.9
3,753,277	-				-0.2
3,753,345	+				+1.0
3,753,345	+				-0.4
3,753,345	+				+1.4
3,753,345	+				+1.0
3,753,345	+				+0.8
3,753,345	+				+0.9
3,753,345	+				+1.2
3,753,346	-				+0.3
3,753,437	+				+0.2
3,753,482	+				-0.1
3,753,926	+		LRK54_RS17180	0.38	+0.4
3,753,926	+		LRK54_RS17180	0.38	+2.4
3,753,926	+		LRK54_RS17180	0.38	-1.3
3,753,926	+		LRK54_RS17180	0.38	+0.3
3,753,926	+		LRK54_RS17180	0.38	-0.2
3,753,926	+		LRK54_RS17180	0.38	+0.8
3,753,926	+		LRK54_RS17180	0.38	+1.1
3,753,926	+		LRK54_RS17180	0.38	+0.0
3,753,926	+		LRK54_RS17180	0.38	+0.4
3,753,926	+		LRK54_RS17180	0.38	+0.1
3,753,926	+		LRK54_RS17180	0.38	+0.2
3,753,926	+		LRK54_RS17180	0.38	-0.2
3,753,926	+		LRK54_RS17180	0.38	-1.0
3,753,926	+		LRK54_RS17180	0.38	+0.4
3,753,926	+		LRK54_RS17180	0.38	-0.8
3,753,926	+		LRK54_RS17180	0.38	-0.7
3,753,926	+		LRK54_RS17180	0.38	+0.3
3,753,927	-		LRK54_RS17180	0.38	+0.5
3,753,927	-		LRK54_RS17180	0.38	-0.2
3,753,927	-		LRK54_RS17180	0.38	+0.5
3,753,927	-		LRK54_RS17180	0.38	-0.1
3,753,927	-		LRK54_RS17180	0.38	+0.4
3,753,927	-		LRK54_RS17180	0.38	+0.2
3,753,927	-		LRK54_RS17180	0.38	+0.6
3,753,927	-		LRK54_RS17180	0.38	+0.0
3,753,927	-		LRK54_RS17180	0.38	+1.4
3,753,927	-		LRK54_RS17180	0.38	+0.0
3,753,927	-		LRK54_RS17180	0.38	-0.6
3,753,927	-		LRK54_RS17180	0.38	+1.8
3,753,927	-		LRK54_RS17180	0.38	+0.7
3,753,927	-		LRK54_RS17180	0.38	-0.1
3,753,927	-		LRK54_RS17180	0.38	-1.1
3,753,927	-		LRK54_RS17180	0.38	-0.5
3,753,927	-		LRK54_RS17180	0.38	+0.2
3,753,944	+		LRK54_RS17180	0.39	+2.9
3,753,944	+		LRK54_RS17180	0.39	+0.8
3,753,944	+		LRK54_RS17180	0.39	-0.3
3,753,944	+		LRK54_RS17180	0.39	+0.1
3,753,944	+		LRK54_RS17180	0.39	-0.3
3,753,944	+		LRK54_RS17180	0.39	+0.4
3,753,945	-		LRK54_RS17180	0.39	-0.4
3,753,945	-		LRK54_RS17180	0.39	-0.6
3,753,945	-		LRK54_RS17180	0.39	+0.5
3,753,945	-		LRK54_RS17180	0.39	+0.2
3,753,945	-		LRK54_RS17180	0.39	-0.6
3,753,945	-		LRK54_RS17180	0.39	+0.4
3,753,945	-		LRK54_RS17180	0.39	+0.7
3,753,945	-		LRK54_RS17180	0.39	+1.9
3,753,945	-		LRK54_RS17180	0.39	+0.8
3,753,945	-		LRK54_RS17180	0.39	+1.0
3,753,945	-		LRK54_RS17180	0.39	+1.6
3,753,945	-		LRK54_RS17180	0.39	-0.2
3,753,945	-		LRK54_RS17180	0.39	-0.4
3,753,945	-		LRK54_RS17180	0.39	+0.0
3,753,983	+		LRK54_RS17180	0.42	-0.2
3,753,983	+		LRK54_RS17180	0.42	+1.1
3,753,983	+		LRK54_RS17180	0.42	+0.1
3,753,983	+		LRK54_RS17180	0.42	-1.2
3,753,983	+		LRK54_RS17180	0.42	+0.4
3,753,983	+		LRK54_RS17180	0.42	-0.5
3,753,983	+		LRK54_RS17180	0.42	+0.5
3,753,983	+		LRK54_RS17180	0.42	+0.5
3,753,983	+		LRK54_RS17180	0.42	+0.5
3,753,983	+		LRK54_RS17180	0.42	-0.1
3,753,984	-		LRK54_RS17180	0.42	-0.3
3,753,984	-		LRK54_RS17180	0.42	+0.8
3,753,984	-		LRK54_RS17180	0.42	-0.7
3,753,984	-		LRK54_RS17180	0.42	+0.9
3,754,336	+		LRK54_RS17180	0.66	+0.1
3,754,337	-		LRK54_RS17180	0.67	+0.3
3,754,403	+		LRK54_RS17180	0.71	+1.8
3,754,413	-		LRK54_RS17180	0.72	+0.0
3,754,604	+		LRK54_RS17180	0.85	+1.4
3,754,604	+		LRK54_RS17180	0.85	-0.3
3,754,604	+		LRK54_RS17180	0.85	+1.0
3,754,604	+		LRK54_RS17180	0.85	+0.6
3,754,604	+		LRK54_RS17180	0.85	-1.0
3,754,605	-		LRK54_RS17180	0.85	-0.5
3,754,736	+				+0.3
3,754,736	+				+0.2
3,754,736	+				+0.2
3,754,736	+				-0.5
3,754,736	+				-0.2
3,754,736	+				+0.1
3,754,736	+				+0.1
3,754,736	+				-0.5
3,754,736	+				+0.8
3,754,736	+				-0.6
3,754,736	+				-0.2
3,754,736	+				+0.8
3,754,736	+				-1.6
3,754,736	+				+0.2
3,754,736	+				+0.6
3,754,736	+				+0.3
3,754,736	+				-0.7
3,754,737	-				+2.4
3,754,737	-				-0.5
3,754,737	-				+1.0
3,754,737	-				-0.1
3,754,737	-				-0.1
3,754,737	-				-0.6
3,754,737	-				+1.2
3,754,737	-				-1.0
3,754,737	-				-0.7
3,754,737	-				+1.1
3,754,737	-				+0.1
3,754,737	-				+0.4
3,754,737	-				+0.3
3,754,737	-				-0.3
3,754,737	-				+0.3
3,754,737	-				+0.1
3,754,753	+				-0.5
3,754,753	+				-0.7
3,754,753	+				-0.7
3,754,753	+				-1.0
3,754,753	+				+0.0
3,754,753	+				+0.8
3,754,753	+				+0.7
3,754,753	+				+0.0
3,754,753	+				+1.4
3,754,753	+				+0.4
3,754,754	-				+2.4
3,754,754	-				+1.4
3,754,754	-				+0.6
3,754,754	-				-0.7
3,754,754	-				+1.2
3,754,754	-				+1.4
3,754,754	-				-0.2
3,754,754	-				-0.4
3,754,754	-				+1.9
3,754,790	+				-0.9
3,754,790	+				-0.7
3,754,790	+				-0.2
3,754,790	+				-0.7
3,754,790	+				+0.5
3,754,790	+				-1.3
3,754,790	+				+1.6
3,754,790	+				+1.4
3,754,790	+				+0.4
3,754,790	+				+0.4
3,754,791	-				+1.2
3,754,791	-				+0.1
3,754,791	-				+0.8
3,754,791	-				+0.0
3,754,791	-				+0.1
3,754,791	-				+1.5
3,754,791	-				+1.5
3,754,791	-				-0.2
3,754,791	-				+0.3
3,754,791	-				+1.8
3,754,793	+				-0.4
3,754,793	+				+0.8
3,754,793	+				+0.6
3,754,793	+				+0.3
3,754,793	+				+1.1
3,754,794	-				-0.9
3,754,794	-				-0.1
3,754,794	-				+0.0
3,754,794	-				+0.2
3,754,794	-				+0.5
3,754,794	-				+1.2
3,754,794	-				+0.7
3,754,799	+				+0.3
3,754,799	+				+0.0
3,754,799	+				+0.0
3,754,799	+				+0.1
3,754,799	+				+0.5
3,754,800	-				+1.1
3,754,800	-				+0.4
3,754,800	-				+0.0
3,754,800	-				+1.0
3,754,800	-				-0.0
3,754,800	-				+0.0
3,754,800	-				+1.4
3,754,800	-				-1.1
3,754,848	+				-0.3
3,754,848	+				+0.8
3,754,848	+				+1.2
3,754,848	+				-0.8
3,754,848	+				+1.5
3,754,848	+				+0.2
3,754,849	-				+0.0
3,754,849	-				-0.6
3,754,908	+				-0.3
3,754,909	-				+1.1
3,754,955	+				+0.8
3,754,955	+				+0.6
3,754,955	+				-0.2
3,754,955	+				-0.3
3,754,956	-				+1.0
3,754,956	-				+0.4
3,754,956	-				-0.8
3,754,956	-				-0.6
3,755,232	+		LRK54_RS17185	0.20	+1.5
3,755,232	+		LRK54_RS17185	0.20	-0.3
3,755,233	-		LRK54_RS17185	0.20	+0.8
3,755,324	-		LRK54_RS17185	0.27	+0.5
3,755,324	-		LRK54_RS17185	0.27	+0.2
3,755,721	-		LRK54_RS17185	0.56	+0.2