Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS20285

Experiment: R2A with Fusidic 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusidic 0.001 mg/ml
5,008,198	-		CA265_RS20275	0.42	+0.1
5,008,287	-		CA265_RS20275	0.52	-0.1
5,008,287	-		CA265_RS20275	0.52	-0.1
5,008,287	-		CA265_RS20275	0.52	-1.3
5,008,349	-		CA265_RS20275	0.59	-0.5
5,008,443	-		CA265_RS20275	0.69	-1.0
5,008,449	+		CA265_RS20275	0.70	-0.9
5,008,449	+		CA265_RS20275	0.70	-0.3
5,008,652	-				+0.7
5,008,684	-				+0.3
5,008,713	+				-0.2
5,008,754	+				+0.8
5,008,771	+		CA265_RS20280	0.13	+0.2
5,008,797	-		CA265_RS20280	0.19	+0.4
5,009,036	-		CA265_RS20280	0.78	+0.6
5,009,062	+		CA265_RS20280	0.84	+0.5
5,009,067	-		CA265_RS20280	0.85	+0.1
5,009,106	+				+0.5
5,009,106	+				-0.7
5,009,107	-				+0.3
5,009,109	-				-0.0
5,009,118	-				+0.5
5,009,130	-				+0.2
5,009,202	+				+0.5
5,009,203	-				+0.5
5,009,203	-				+1.5
5,009,203	-				-0.0
5,009,205	+				-0.0
5,009,337	+		CA265_RS20285	0.32	+0.8
5,009,349	+		CA265_RS20285	0.35	+0.6
5,009,359	+		CA265_RS20285	0.37	+0.6
5,009,364	+		CA265_RS20285	0.38	-0.2
5,009,383	+		CA265_RS20285	0.43	-2.1
5,009,399	-		CA265_RS20285	0.46	+0.4
5,009,404	-		CA265_RS20285	0.47	+0.6
5,009,406	+		CA265_RS20285	0.48	+1.0
5,009,407	-		CA265_RS20285	0.48	-0.5
5,009,435	+		CA265_RS20285	0.54	+1.4
5,009,439	+		CA265_RS20285	0.55	+1.6
5,009,439	+		CA265_RS20285	0.55	-0.8
5,009,439	+		CA265_RS20285	0.55	+1.4
5,009,452	+		CA265_RS20285	0.58	+0.2
5,009,481	+		CA265_RS20285	0.64	+0.8
5,009,482	-		CA265_RS20285	0.65	+1.5
5,009,554	-		CA265_RS20285	0.81	-0.1
5,009,640	+				-1.8
5,009,666	-				-0.3
5,009,704	-				-0.4
5,009,709	+				-0.0
5,009,710	-				+0.8
5,009,740	+				-0.5
5,009,751	+				-0.0
5,009,987	-		CA265_RS20290	0.23	+0.2
5,009,998	-		CA265_RS20290	0.24	+0.5
5,009,999	+		CA265_RS20290	0.24	-0.2
5,010,006	+		CA265_RS20290	0.24	-0.7
5,010,006	+		CA265_RS20290	0.24	+1.3
5,010,007	-		CA265_RS20290	0.24	-0.8
5,010,062	-		CA265_RS20290	0.28	+0.2
5,010,114	-		CA265_RS20290	0.31	+0.3
5,010,116	-		CA265_RS20290	0.32	+0.3
5,010,139	+		CA265_RS20290	0.33	-0.5
5,010,142	-		CA265_RS20290	0.33	-0.3
5,010,143	+		CA265_RS20290	0.33	-0.5
5,010,143	+		CA265_RS20290	0.33	+0.3
5,010,143	+		CA265_RS20290	0.33	+0.7
5,010,144	-		CA265_RS20290	0.33	+0.2
5,010,147	+		CA265_RS20290	0.34	-0.0
5,010,147	+		CA265_RS20290	0.34	+0.5
5,010,148	-		CA265_RS20290	0.34	-0.2
5,010,148	-		CA265_RS20290	0.34	-0.3
5,010,148	-		CA265_RS20290	0.34	-0.6
5,010,173	-		CA265_RS20290	0.35	-1.0
5,010,210	-		CA265_RS20290	0.38	+0.0
5,010,249	+		CA265_RS20290	0.41	-1.0
5,010,249	+		CA265_RS20290	0.41	+0.7
5,010,399	+		CA265_RS20290	0.51	+0.6
5,010,400	-		CA265_RS20290	0.51	-0.6
5,010,400	-		CA265_RS20290	0.51	+0.3
5,010,402	+		CA265_RS20290	0.51	+0.4
5,010,403	-		CA265_RS20290	0.51	+0.5
5,010,415	-		CA265_RS20290	0.52	-0.9
5,010,415	-		CA265_RS20290	0.52	+0.1
5,010,419	-		CA265_RS20290	0.52	-0.4
5,010,419	-		CA265_RS20290	0.52	+1.3
5,010,421	+		CA265_RS20290	0.52	-1.3
5,010,421	+		CA265_RS20290	0.52	+2.5
5,010,474	-		CA265_RS20290	0.56	+0.3
5,010,482	+		CA265_RS20290	0.56	-0.3
5,010,482	+		CA265_RS20290	0.56	+0.4
5,010,482	+		CA265_RS20290	0.56	-0.0
5,010,483	-		CA265_RS20290	0.56	-0.1
5,010,483	-		CA265_RS20290	0.56	-0.3
5,010,544	+		CA265_RS20290	0.61	-0.2
5,010,594	+		CA265_RS20290	0.64	+0.7
5,010,626	+		CA265_RS20290	0.66	+0.3
5,010,626	+		CA265_RS20290	0.66	+0.1
5,010,627	-		CA265_RS20290	0.66	-0.2
5,010,627	-		CA265_RS20290	0.66	+0.1
5,010,627	-		CA265_RS20290	0.66	-0.2
5,010,628	+		CA265_RS20290	0.66	+0.2