Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12685

Experiment: R2A with Fusidic 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusidic 0.001 mg/ml
3,160,653	-		CA265_RS12680	0.17	-0.1
3,160,656	+		CA265_RS12680	0.17	+0.2
3,160,683	+		CA265_RS12680	0.20	+0.4
3,160,692	+		CA265_RS12680	0.21	+1.0
3,160,699	+		CA265_RS12680	0.22	+0.3
3,160,700	-		CA265_RS12680	0.22	+0.3
3,160,767	+		CA265_RS12680	0.30	-1.3
3,160,959	-		CA265_RS12680	0.51	-0.2
3,161,004	+		CA265_RS12680	0.56	+0.7
3,161,004	+		CA265_RS12680	0.56	-0.0
3,161,166	+		CA265_RS12680	0.75	+0.6
3,161,168	+		CA265_RS12680	0.75	+0.4
3,161,169	-		CA265_RS12680	0.75	-0.4
3,161,169	-		CA265_RS12680	0.75	-0.3
3,161,191	-		CA265_RS12680	0.77	-0.8
3,161,209	-		CA265_RS12680	0.79	+0.5
3,161,274	+		CA265_RS12680	0.87	+0.3
3,161,297	-		CA265_RS12680	0.89	-0.4
3,161,297	-		CA265_RS12680	0.89	-0.8
3,161,382	-				-0.5
3,161,511	+				+1.2
3,161,535	+				-0.6
3,161,544	+				-0.5
3,161,544	+				+0.0
3,161,549	+				-0.1
3,161,573	-				+0.3
3,161,573	-				-0.4
3,161,573	-				+0.0
3,161,573	-				+1.5
3,161,696	+				+0.3
3,161,852	-		CA265_RS12685	0.18	-0.1
3,161,864	+		CA265_RS12685	0.18	-0.5
3,161,865	-		CA265_RS12685	0.18	-0.5
3,161,940	-		CA265_RS12685	0.23	+0.5
3,161,948	-		CA265_RS12685	0.23	-0.8
3,161,949	+		CA265_RS12685	0.23	+0.4
3,161,950	-		CA265_RS12685	0.23	-0.4
3,161,950	-		CA265_RS12685	0.23	+0.7
3,161,996	+		CA265_RS12685	0.26	-1.6
3,162,077	+		CA265_RS12685	0.30	+0.3
3,162,102	+		CA265_RS12685	0.32	+0.9
3,162,102	+		CA265_RS12685	0.32	-0.1
3,162,102	+		CA265_RS12685	0.32	-0.5
3,162,103	-		CA265_RS12685	0.32	-1.4
3,162,308	+		CA265_RS12685	0.43	+0.4
3,162,410	-		CA265_RS12685	0.49	-0.2
3,162,410	-		CA265_RS12685	0.49	-0.5
3,162,410	-		CA265_RS12685	0.49	-0.2
3,162,412	-		CA265_RS12685	0.49	-0.3
3,162,419	-		CA265_RS12685	0.50	-0.6
3,162,419	-		CA265_RS12685	0.50	-0.2
3,162,420	+		CA265_RS12685	0.50	+0.1
3,162,420	+		CA265_RS12685	0.50	+0.1
3,162,421	-		CA265_RS12685	0.50	-0.4
3,162,431	+		CA265_RS12685	0.50	-0.4
3,162,469	+		CA265_RS12685	0.53	-1.5
3,162,498	-		CA265_RS12685	0.54	-1.7
3,162,516	+		CA265_RS12685	0.55	-1.5
3,162,533	-		CA265_RS12685	0.56	+0.1
3,162,539	-		CA265_RS12685	0.57	-0.4
3,162,554	+		CA265_RS12685	0.57	+0.0
3,162,555	-		CA265_RS12685	0.57	-0.1
3,162,713	+		CA265_RS12685	0.66	-1.1
3,162,786	-		CA265_RS12685	0.71	-1.7
3,162,830	+		CA265_RS12685	0.73	-0.1
3,162,831	-		CA265_RS12685	0.73	-0.8
3,162,832	+		CA265_RS12685	0.73	-0.7
3,162,833	-		CA265_RS12685	0.73	+1.5
3,162,880	+		CA265_RS12685	0.76	-0.3
3,162,892	+		CA265_RS12685	0.77	-0.7
3,162,987	+		CA265_RS12685	0.82	-0.6
3,162,988	-		CA265_RS12685	0.82	-1.5
3,163,073	-		CA265_RS12685	0.87	-0.2
3,163,116	+		CA265_RS12685	0.89	-0.8
3,163,117	-		CA265_RS12685	0.89	+0.2
3,163,160	+				+0.6
3,163,161	-				-0.4
3,163,187	+				-0.6
3,163,251	+				-0.1
3,163,256	-				-0.3
3,163,279	+				-0.2
3,163,304	-				-0.8
3,163,304	-				-0.2
3,163,307	+				+0.1
3,163,343	-				-0.2
3,163,343	-				+0.3
3,163,343	-				-1.6
3,163,423	+				-0.4
3,163,424	-				+0.6
3,163,424	-				-0.1
3,163,454	+				-1.6
3,163,536	-		CA265_RS12690	0.14	-0.4
3,163,643	+		CA265_RS12690	0.20	+0.7
3,163,644	-		CA265_RS12690	0.21	-0.1
3,163,644	-		CA265_RS12690	0.21	+0.0
3,163,772	+		CA265_RS12690	0.28	-0.8
3,163,885	-		CA265_RS12690	0.34	-0.1
3,163,889	+		CA265_RS12690	0.35	-0.3
3,163,892	-		CA265_RS12690	0.35	-1.0
3,163,974	+		CA265_RS12690	0.40	-0.2
3,164,020	-		CA265_RS12690	0.42	-0.8
3,164,020	-		CA265_RS12690	0.42	+0.2
3,164,076	+		CA265_RS12690	0.45	-0.5
3,164,157	+		CA265_RS12690	0.50	+0.5
3,164,174	-		CA265_RS12690	0.51	-0.2
3,164,220	+		CA265_RS12690	0.54	-0.3
3,164,250	+		CA265_RS12690	0.55	-0.1