Experiment: R2A with Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03905 and CA265_RS03910 are separated by 13 nucleotides CA265_RS03910 and CA265_RS03915 are separated by 414 nucleotides CA265_RS03915 and CA265_RS03920 are separated by 800 nucleotides
CA265_RS03905: CA265_RS03905 - hypothetical protein, at 921,045 to 921,836
_RS03905
CA265_RS03910: CA265_RS03910 - hypothetical protein, at 921,850 to 922,419
_RS03910
CA265_RS03915: CA265_RS03915 - hypothetical protein, at 922,834 to 924,537
_RS03915
CA265_RS03920: CA265_RS03920 - hypothetical protein, at 925,338 to 928,484
_RS03920
Position (kb) 922
923
924
925 Strain fitness (log2 ratio) -2
-1
0
1 at 921.842 kb on + strand at 921.974 kb on + strand, within CA265_RS03910 at 921.978 kb on + strand, within CA265_RS03910 at 922.102 kb on + strand, within CA265_RS03910 at 922.112 kb on + strand, within CA265_RS03910 at 922.126 kb on + strand, within CA265_RS03910 at 922.127 kb on - strand, within CA265_RS03910 at 922.170 kb on + strand, within CA265_RS03910 at 922.170 kb on + strand, within CA265_RS03910 at 922.171 kb on - strand, within CA265_RS03910 at 922.201 kb on + strand, within CA265_RS03910 at 922.202 kb on - strand, within CA265_RS03910 at 922.206 kb on + strand, within CA265_RS03910 at 922.206 kb on + strand, within CA265_RS03910 at 922.355 kb on - strand, within CA265_RS03910 at 922.394 kb on + strand at 922.395 kb on - strand at 922.396 kb on + strand at 922.423 kb on + strand at 922.443 kb on + strand at 922.449 kb on + strand at 922.450 kb on - strand at 922.612 kb on - strand at 922.670 kb on - strand at 922.711 kb on - strand at 922.713 kb on + strand at 922.728 kb on - strand at 922.761 kb on + strand at 922.822 kb on + strand at 922.823 kb on - strand at 922.823 kb on - strand at 922.829 kb on + strand at 922.843 kb on - strand at 922.901 kb on - strand at 922.902 kb on + strand at 922.956 kb on + strand at 922.956 kb on + strand at 922.985 kb on - strand at 922.987 kb on - strand at 923.007 kb on - strand, within CA265_RS03915 at 923.014 kb on - strand, within CA265_RS03915 at 923.014 kb on - strand, within CA265_RS03915 at 923.014 kb on - strand, within CA265_RS03915 at 923.016 kb on + strand, within CA265_RS03915 at 923.017 kb on - strand, within CA265_RS03915 at 923.053 kb on - strand, within CA265_RS03915 at 923.053 kb on - strand, within CA265_RS03915 at 923.137 kb on - strand, within CA265_RS03915 at 923.141 kb on + strand, within CA265_RS03915 at 923.231 kb on + strand, within CA265_RS03915 at 923.232 kb on - strand, within CA265_RS03915 at 923.247 kb on - strand, within CA265_RS03915 at 923.250 kb on - strand, within CA265_RS03915 at 923.250 kb on - strand, within CA265_RS03915 at 923.291 kb on + strand, within CA265_RS03915 at 923.334 kb on + strand, within CA265_RS03915 at 923.341 kb on - strand, within CA265_RS03915 at 923.386 kb on + strand, within CA265_RS03915 at 923.386 kb on + strand, within CA265_RS03915 at 923.387 kb on - strand, within CA265_RS03915 at 923.480 kb on + strand, within CA265_RS03915 at 923.570 kb on + strand, within CA265_RS03915 at 923.652 kb on + strand, within CA265_RS03915 at 923.664 kb on - strand, within CA265_RS03915 at 923.697 kb on - strand, within CA265_RS03915 at 923.761 kb on + strand, within CA265_RS03915 at 923.954 kb on - strand, within CA265_RS03915 at 924.010 kb on - strand, within CA265_RS03915 at 924.062 kb on - strand, within CA265_RS03915 at 924.062 kb on - strand, within CA265_RS03915 at 924.119 kb on + strand, within CA265_RS03915 at 924.148 kb on - strand, within CA265_RS03915 at 924.184 kb on - strand, within CA265_RS03915 at 924.352 kb on + strand, within CA265_RS03915 at 924.435 kb on + strand at 924.436 kb on - strand at 924.438 kb on + strand at 924.439 kb on - strand at 924.451 kb on + strand at 924.464 kb on - strand at 924.464 kb on - strand at 924.516 kb on - strand at 924.516 kb on - strand at 924.520 kb on - strand at 924.520 kb on - strand at 924.547 kb on - strand at 924.562 kb on + strand at 924.565 kb on + strand at 924.576 kb on + strand at 924.582 kb on + strand at 924.582 kb on + strand at 924.583 kb on - strand at 924.593 kb on + strand at 924.604 kb on - strand at 924.662 kb on - strand at 924.662 kb on - strand at 924.695 kb on + strand at 924.748 kb on + strand at 924.748 kb on + strand at 924.749 kb on - strand at 924.751 kb on + strand at 924.760 kb on - strand at 924.760 kb on - strand at 924.770 kb on + strand at 924.771 kb on - strand at 924.835 kb on - strand at 924.849 kb on - strand at 924.849 kb on - strand at 924.879 kb on + strand at 924.884 kb on + strand at 924.985 kb on - strand at 925.092 kb on + strand at 925.096 kb on + strand at 925.096 kb on + strand at 925.173 kb on - strand at 925.220 kb on - strand at 925.220 kb on - strand at 925.220 kb on - strand at 925.294 kb on + strand at 925.336 kb on + strand at 925.341 kb on + strand at 925.369 kb on + strand at 925.369 kb on + strand at 925.516 kb on + strand at 925.535 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusidic 0.001 mg/ml remove 921,842 + -0.1 921,974 + CA265_RS03910 0.22 -0.7 921,978 + CA265_RS03910 0.22 +0.1 922,102 + CA265_RS03910 0.44 -0.1 922,112 + CA265_RS03910 0.46 -0.2 922,126 + CA265_RS03910 0.48 -0.8 922,127 - CA265_RS03910 0.49 +1.4 922,170 + CA265_RS03910 0.56 +0.0 922,170 + CA265_RS03910 0.56 -0.3 922,171 - CA265_RS03910 0.56 -0.4 922,201 + CA265_RS03910 0.62 -1.7 922,202 - CA265_RS03910 0.62 -0.5 922,206 + CA265_RS03910 0.62 -0.5 922,206 + CA265_RS03910 0.62 +0.3 922,355 - CA265_RS03910 0.89 +0.5 922,394 + -0.7 922,395 - -0.4 922,396 + +0.2 922,423 + -1.1 922,443 + +0.6 922,449 + -1.0 922,450 - -0.5 922,612 - +0.2 922,670 - -0.3 922,711 - +0.6 922,713 + +0.4 922,728 - -0.3 922,761 + -0.5 922,822 + +0.6 922,823 - +0.3 922,823 - -0.3 922,829 + +0.6 922,843 - -0.8 922,901 - -1.1 922,902 + +0.0 922,956 + +0.2 922,956 + +0.8 922,985 - -1.3 922,987 - -0.1 923,007 - CA265_RS03915 0.10 -0.3 923,014 - CA265_RS03915 0.11 +0.1 923,014 - CA265_RS03915 0.11 +0.0 923,014 - CA265_RS03915 0.11 -0.5 923,016 + CA265_RS03915 0.11 -1.3 923,017 - CA265_RS03915 0.11 +0.2 923,053 - CA265_RS03915 0.13 -0.1 923,053 - CA265_RS03915 0.13 -0.4 923,137 - CA265_RS03915 0.18 +0.1 923,141 + CA265_RS03915 0.18 +0.2 923,231 + CA265_RS03915 0.23 +0.2 923,232 - CA265_RS03915 0.23 +0.2 923,247 - CA265_RS03915 0.24 -0.7 923,250 - CA265_RS03915 0.24 +0.1 923,250 - CA265_RS03915 0.24 -0.2 923,291 + CA265_RS03915 0.27 +0.8 923,334 + CA265_RS03915 0.29 -0.5 923,341 - CA265_RS03915 0.30 +0.5 923,386 + CA265_RS03915 0.32 +0.6 923,386 + CA265_RS03915 0.32 -0.9 923,387 - CA265_RS03915 0.32 -0.0 923,480 + CA265_RS03915 0.38 -2.2 923,570 + CA265_RS03915 0.43 +0.2 923,652 + CA265_RS03915 0.48 -1.5 923,664 - CA265_RS03915 0.49 -0.3 923,697 - CA265_RS03915 0.51 +0.5 923,761 + CA265_RS03915 0.54 -1.6 923,954 - CA265_RS03915 0.66 -0.1 924,010 - CA265_RS03915 0.69 -0.7 924,062 - CA265_RS03915 0.72 +0.1 924,062 - CA265_RS03915 0.72 -0.1 924,119 + CA265_RS03915 0.75 +0.4 924,148 - CA265_RS03915 0.77 -1.7 924,184 - CA265_RS03915 0.79 +1.6 924,352 + CA265_RS03915 0.89 -1.8 924,435 + -0.5 924,436 - +0.4 924,438 + -0.5 924,439 - -0.0 924,451 + +0.2 924,464 - -0.0 924,464 - +0.4 924,516 - +0.4 924,516 - -0.8 924,520 - +0.2 924,520 - +0.6 924,547 - -0.9 924,562 + -1.5 924,565 + -0.1 924,576 + -0.8 924,582 + +0.1 924,582 + +0.4 924,583 - -0.0 924,593 + -0.2 924,604 - +0.3 924,662 - +0.9 924,662 - +1.0 924,695 + -1.1 924,748 + +0.2 924,748 + +0.3 924,749 - -0.9 924,751 + +0.5 924,760 - +0.9 924,760 - +0.5 924,770 + +0.2 924,771 - +0.0 924,835 - -0.1 924,849 - +0.3 924,849 - +0.3 924,879 + -0.6 924,884 + -0.7 924,985 - +0.6 925,092 + -1.2 925,096 + +0.0 925,096 + +0.2 925,173 - +0.2 925,220 - +0.1 925,220 - -0.1 925,220 - -0.7 925,294 + -0.5 925,336 + +1.6 925,341 + +0.3 925,369 + -1.0 925,369 + -0.5 925,516 + +0.2 925,535 - -0.7
Or see this region's nucleotide sequence